G142058


Basic Information

Item Value
gene id G142058
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 1476980 ~ 1478639 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU168048
atttatttctgtaaagctgcttgtccattgttaaaagcgccatacaaacaaaattcaactgaattgaatattaatgtaaaaaatacaaatgtaatcGCCAGtttgatttacaaaaaaaaaaagtgtcaaatgACAGAATAACTGTCATTCCAAAGTGCAATCATTAAATCAGATcaatttatttcagtttctgaACATTTACACACCAAAATCTAGAATGTAAatagaaaatacagtaaaagtAGTAAGTATAGTGGAACTCGGTAACTCAGCCTGCGTGTAGAACTGTTAAAGCTAGCCTCTGGATAATTAGCATGTAGCCGTAGTGGTGCTATTTTAACTATAAAGCACATATTTAACTATAAACCCAACTTATTTTTACACAAgtgttttgtcttgtctttcCGACCGCTGTCTTTATTCCACCTGTTTTTACACTGGTATTAAGACTCCACTGTCAATCATTATGAGAGTTAGCGTTTAGATCATTGAATAAAAAACACGTTAGTTCATAAAATAATACTATATAACCGTGATCAAATGTAACACTGGTTAGCTAGAATTAGCTAATGTTTATTGACTAAGGAATTTTCATAATTTCCATGCTTTAATAGCTGCGTACTCTGGTGGcagatttatttatgcatttgtatATTAAACTActgatttatcatttaaaatattacttgaTTATCAGGACTAttgagtgtgttattctgcttcaCAGATTAGATTTATGTATTGATGAACCATAACAAATCTGTTATTTGAGCATATGGCTGCTTGATAATGGCTAACAGGAAATTCGGGAGCCTGATGTTACGTATCGGACACAGAGAAGATCGGATCTGGACCACATCTGTCCTTCCCACAGATTAACTCTGCAGAGGTGTGCTGACTTTAATCCGAGCCCAATACACCGCCCAGCACACACACCCCACGCACAGCACCAACAAAAATGTCCAGAGGGCGTAGATGGCGTTGTAATCCTTCGCCTCCGCCACCGTGGCACCCTGTGGGACGACGAGAGCGtacaacacatttttacacacaaacacctaaaACAGTTTGATGCTGTAACTTCAATGTGTTTCTTACGATCAGTCCTCCAGCGACGATGGCAAAGAAGATGGCCATCAGGGTGAAGTACACACAGCGCTTCATGGGGTACTCCTGTCCGATAAAGCTCCTGACCATGACAAACACAAACGTTTCTATAGAGCGATGTGCTGTAAGTCTATAAATCTgtactgtaaatctgtaaatctgtaaatctgcactgtaaatatgtaaatatacactGTAAATATGTACTGTAACTCTGCTGTAATTCTGTAAATCTATAGTGTAAATCTGTAAAGCTGTAGTGTAAATCTGTAAAGtaaatctgtaGTGTAAATCTGCACCATAAATCTGTAgtataaatctgtaaatctgtaaatctgtaaatctgcactgtaaatctgtacatctgtaaatctgtaatgtaaatctgtaaatatgcACTGTAACTGCTGTAATTCTGTAAATCTACACTGTAAATCTGCATTGTAATCTGTAATTCTGGAATGTAAATTTGTAAAGTAAATCTGCGTTGTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU168048 True 1600 lncRNA 0.36 3 1476980 1478639

Neighbor

gene id symbol gene type direction distance location
LOC113523903 LOC108274807 coding upstream 3900 1462445 ~ 1473080 (+)
LOC113525101 NA coding upstream 1032532 438027 ~ 444448 (+)
LOC113525100 LOC108274824 coding upstream 1146996 324146 ~ 329984 (+)
LOC113525382 gja9 coding upstream 1343573 127708 ~ 133407 (+)
fabp10b LOC108274544 coding upstream 1349642 115546 ~ 127338 (+)
LOC113523877 NA coding downstream 17834 1496473 ~ 1505004 (+)
LOC113523893 mterf1 coding downstream 56228 1534867 ~ 1540467 (+)
LOC113523867 tmem42,LOC108274871,LOC103045080,LOC107394544 coding downstream 112219 1590858 ~ 1597758 (+)
ehmt2 ehmt2 coding downstream 144127 1622766 ~ 1646549 (+)
slc44a4 NA coding downstream 169085 1647724 ~ 1682793 (+)
G141930 eomes,LOC108274799 non-coding upstream 157421 1313581 ~ 1319559 (+)
G141889 NA non-coding upstream 254490 1178968 ~ 1222490 (+)
G142062 NA non-coding downstream 2071 1480710 ~ 1482647 (+)
G142074 LOC108274826 non-coding downstream 31344 1509983 ~ 1515675 (+)
G142097 NA non-coding downstream 183449 1662088 ~ 1687665 (+)
G142052 LOC108274818,LOC108274817 non-coding downstream 225249 1703888 ~ 1719950 (+)
G142055 NA non-coding downstream 242674 1721313 ~ 1778196 (+)
G141825 LOC108274854,LOC108279645 other upstream 267107 938715 ~ 1209873 (+)
LOC117598144 NA other upstream 497345 941723 ~ 979635 (+)
G141824 LOC108274854 other upstream 581396 767055 ~ 895584 (+)
LOC117598023 LOC108274854 other upstream 607889 867669 ~ 869091 (+)
G141823 LOC108274854 other upstream 734779 674232 ~ 742201 (+)
dus3l dus3l other downstream 69618 1548257 ~ 1559910 (+)
G142093 LOC108274838 other downstream 132872 1611511 ~ 1613336 (+)
LOC113523891 ehmt2 other downstream 136504 1615143 ~ 1622790 (+)
LOC113524920 NA other downstream 576392 2055031 ~ 2085878 (+)
LOC113545687 NA other downstream 590599 2069238 ~ 2183053 (+)

Expression


Co-expression Network