Gene
RNA
| Item | Value |
|---|---|
| gene id | G142062 |
| gene name | NA |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047603.1 |
| NCBI id | CM018549.1 |
| chromosome length | 29458963 |
| location | 1480710 ~ 1482647 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU168052 | True | 621 | lncRNA | 0.47 | 2 | 1480710 | 1482647 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC113523903 | LOC108274807 | coding | upstream | 7630 | 1462445 ~ 1473080 (+) |
| LOC113525101 | NA | coding | upstream | 1036262 | 438027 ~ 444448 (+) |
| LOC113525100 | LOC108274824 | coding | upstream | 1150726 | 324146 ~ 329984 (+) |
| LOC113525382 | gja9 | coding | upstream | 1347303 | 127708 ~ 133407 (+) |
| fabp10b | LOC108274544 | coding | upstream | 1353372 | 115546 ~ 127338 (+) |
| LOC113523877 | NA | coding | downstream | 13826 | 1496473 ~ 1505004 (+) |
| LOC113523893 | mterf1 | coding | downstream | 52220 | 1534867 ~ 1540467 (+) |
| LOC113523867 | tmem42,LOC108274871,LOC103045080,LOC107394544 | coding | downstream | 108211 | 1590858 ~ 1597758 (+) |
| ehmt2 | ehmt2 | coding | downstream | 140119 | 1622766 ~ 1646549 (+) |
| slc44a4 | NA | coding | downstream | 165077 | 1647724 ~ 1682793 (+) |
| G142058 | NA | non-coding | upstream | 2071 | 1476980 ~ 1478639 (+) |
| G141930 | eomes,LOC108274799 | non-coding | upstream | 161151 | 1313581 ~ 1319559 (+) |
| G141889 | NA | non-coding | upstream | 258220 | 1178968 ~ 1222490 (+) |
| G142074 | LOC108274826 | non-coding | downstream | 27336 | 1509983 ~ 1515675 (+) |
| G142097 | NA | non-coding | downstream | 179441 | 1662088 ~ 1687665 (+) |
| G142052 | LOC108274818,LOC108274817 | non-coding | downstream | 221241 | 1703888 ~ 1719950 (+) |
| G142055 | NA | non-coding | downstream | 238666 | 1721313 ~ 1778196 (+) |
| G142110 | NA | non-coding | downstream | 246510 | 1729157 ~ 1828083 (+) |
| G141825 | LOC108274854,LOC108279645 | other | upstream | 270837 | 938715 ~ 1209873 (+) |
| LOC117598144 | NA | other | upstream | 501075 | 941723 ~ 979635 (+) |
| G141824 | LOC108274854 | other | upstream | 585126 | 767055 ~ 895584 (+) |
| LOC117598023 | LOC108274854 | other | upstream | 611619 | 867669 ~ 869091 (+) |
| G141823 | LOC108274854 | other | upstream | 738509 | 674232 ~ 742201 (+) |
| dus3l | dus3l | other | downstream | 65610 | 1548257 ~ 1559910 (+) |
| G142093 | LOC108274838 | other | downstream | 128864 | 1611511 ~ 1613336 (+) |
| LOC113523891 | ehmt2 | other | downstream | 132496 | 1615143 ~ 1622790 (+) |
| LOC113524920 | NA | other | downstream | 572384 | 2055031 ~ 2085878 (+) |
| LOC113545687 | NA | other | downstream | 586591 | 2069238 ~ 2183053 (+) |
