G142097


Basic Information

Item Value
gene id G142097
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 1662088 ~ 1687665 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU168112
tcacacacacacacacacacacgtcacGGTGTGAAACTCACACTCATACTGTAGAATTCTGTTAGGTTGCTTAACAGAGCTTGAAAAAGACTAAACACCAATTTCACACAATTTAGGCTCCGCCCCCTCACACAGACTGACATCCTGTTAGTGTAACTACTAACGTCGGCCATTTTAAGTCTCCGCCCCAAATGCTAACACCCGAGAGTTCTTGATAGTgattatttaatgtgtgtgtgtgcacaacgTTAGCTGTTAGATTAAACATGTTTAGCATTCTATAAGGGTTtatccgagtgtgtgtgtgtgtttatgtacagTGCTAATCTTATCTTATACGTTAACTGCTAACTATCCTGTTAAAGAACCAGGCTATAACAGCGCAAACTTACCCTACGTTCACATTAACGAGCCACGAGGCGGCAGGCGAGCGTTCGTTTTCTACGTACGTGCCGCCACAGAGCCCCCGGACCCGAGATTTCCTTAACTCCGGGTCTTTAACGCTGCGCTTACGAACACTATTAGAAATGATTGGCAGCTGACGTAACACTTTTCTGTGGTTGCCCTGGTTACCGTTTAGCATCACTGCACATCTTGGTAGTTCATTCACGCTCAAAGTAGACGGCTACTTTCAACCTCGGCATCAGGAAGTGACACAATCACTAGCGATGTTAGGGGGCCAGCGACCGGAAACTGGACAATGTTTAACGTTATACAAACGATTAAGTAATAGTGgtacatttctcattttttcactCGGTTTCTATCAGATACTTGTCGCGATTCCTGAACCAATCAGTAAGACCCTTGGTTTATTCGACACGCCTCATTTATACACAAGCCACTCCCTCCAGAATTTGTATTTCTGTATACATTTGGTAGCTAACTATCATCTCTGCGGCCATATCGTACTAGCCTGGTGCAACGtgtgaaaccatggcaacctgcataaattaaattaaagatagACACGCCTTCTAATGACGTGCCGCCGGCATGAACTGCTGTTACCTTTCTGTATCTTAGAGATCCAAGAAATTCGGCGAATAAGATGAACTCAGCcctcacttgtgtgtgtgtttcacttgcCTCGATCTCTTCTCAGCCTAGGAAGCCTTGTGATTGGTCATGTAAGACAGCCaatgaaaatgagagaaaacgAGAAATCCGAAACTAGCCACGGTATAACGGTTCTCCAAAAAGTTACAGAGAAGGATTTACGGTTCATTGCACTCAGGCAGAAGAATAACCTGCGATGTTCTAGCGTAACGTTTACTCGCTAACTGGATTCACTTAGTAACGAATTTCTGCCTCAACAGTGTTTCTGATGTTACGCTATAAACACAAGGAAGGAGACGTCAATGCAAGAAGGATTTCCAGTTGGAACGACGTAAAGCTCTGTCATCACCGATCATCCTGCGTGAACTTAGCGTTTGTGATGCtagttttgctatttttttttaagttacagTAGCAccttacagatttaacaagcttCTAACAAGATTCTCCTGGTAACCAGGTAGCGTTGGGAGGCGTGGCTTACCCATGATGCCATAGGAGAGTGTAATCCACCTAATGCTGATGCGGCCATGTTAATCCCTCGTTGTCATAGATACTGGCTAACGTCCACGTGACGTGGTTTCCCTATAACGTACAagatacccataatgcactgtagCAGTAACGTGTATGGCGGTGATCCTGATGCGTCAGGCTCCTTTGCGGTGGAAAAGCGTGGAACGGATGCGTGGATTAGACACTCGAGAACCAAAAGGgataaataatactttttacaTACACTAATGCGCTAAACGACGTTAGCTCAACACGCGTGTAAGGTGTGTGAAGAGGAATTCTCTTTGGTATGAAGCAGAAGTCATGAAACAGTGGGATAATGATGtacaagtgtgtgcgtgtgtgtgtgtgtgtgtgttatttttcacacactcgctttattaattttttatggaACATCATTAAACTCCAGCTGTGTTTTAATACTGTTTCTCTGTACTGGACaatctgtggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcggtcctgacatcatctctctctctctctcccagtatctctctctctctctctctcgttctctctcacacacattcacacactcagcatccagaagaagaagaagatggcgAGGAAGAGGAAGAGCGAGTCCTGCCAGTTGTTGCCGTTGTTACCATTCCCGTTGCCTTGGTGATCTGCGGCATAGTGAGGAtctgaaaattattatttacataaagaaaaaaaaaagtgagatttTGAGATTTCAGAAGTGACATAACGACATTAATGACCCAATACATATCATAAGAGCTCTGTGTAAACGTAGATGTAGGAGAcgttaac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU168112 True 2387 lncRNA 0.44 3 1662088 1687665

Neighbor

gene id symbol gene type direction distance location
ehmt2 ehmt2 coding upstream 15539 1622766 ~ 1646549 (+)
LOC113523867 tmem42,LOC108274871,LOC103045080,LOC107394544 coding upstream 64330 1590858 ~ 1597758 (+)
LOC113523893 mterf1 coding upstream 121621 1534867 ~ 1540467 (+)
LOC113523877 NA coding upstream 157084 1496473 ~ 1505004 (+)
LOC113523903 LOC108274807 coding upstream 189008 1462445 ~ 1473080 (+)
LOC113524921 NA coding downstream 285867 1973532 ~ 1998149 (+)
LOC113524922 NA coding downstream 318401 2006066 ~ 2033649 (+)
LOC113524923 NA coding downstream 349210 2036875 ~ 2053264 (+)
LOC113545587 LOC108274833 coding downstream 497058 2184723 ~ 2195601 (+)
lgals17 LOC108274834 coding downstream 519258 2206923 ~ 2217442 (+)
G142074 LOC108274826 non-coding upstream 146413 1509983 ~ 1515675 (+)
G142062 NA non-coding upstream 179441 1480710 ~ 1482647 (+)
G142058 NA non-coding upstream 183449 1476980 ~ 1478639 (+)
G141930 eomes,LOC108274799 non-coding upstream 342529 1313581 ~ 1319559 (+)
LOC117598140 LOC108274854 non-coding upstream 444663 1216269 ~ 1217425 (+)
G142052 LOC108274818,LOC108274817 non-coding downstream 16223 1703888 ~ 1719950 (+)
G142055 NA non-coding downstream 33648 1721313 ~ 1778196 (+)
G142110 NA non-coding downstream 41492 1729157 ~ 1828083 (+)
G142112 NA non-coding downstream 71501 1759166 ~ 1774208 (+)
G142053 LOC108274818,LOC108274817,LOC108274837 non-coding downstream 74957 1762622 ~ 1795910 (+)
LOC113523891 ehmt2 other upstream 39298 1615143 ~ 1622790 (+)
G142093 LOC108274838 other upstream 48752 1611511 ~ 1613336 (+)
dus3l dus3l other upstream 102178 1548257 ~ 1559910 (+)
G141825 LOC108274854,LOC108279645 other upstream 452215 938715 ~ 1209873 (+)
LOC117598144 NA other upstream 682453 941723 ~ 979635 (+)
LOC113524920 NA other downstream 367366 2055031 ~ 2085878 (+)
LOC113545687 NA other downstream 381573 2069238 ~ 2183053 (+)
LOC117597926 NA other downstream 582385 2270050 ~ 2271586 (+)
LOC117598179 NA other downstream 591414 2279079 ~ 2279887 (+)
LOC117598174 NA other downstream 600433 2288098 ~ 2291206 (+)

Expression


Co-expression Network