Gene
RNA
| Item | Value |
|---|---|
| gene id | G142157 |
| gene name | NA |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047603.1 |
| NCBI id | CM018549.1 |
| chromosome length | 29458963 |
| location | 1903163 ~ 1904434 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU168186 | True | 808 | lncRNA | 0.50 | 2 | 1903163 | 1904434 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| slc44a4 | NA | coding | upstream | 220370 | 1647724 ~ 1682793 (+) |
| ehmt2 | ehmt2 | coding | upstream | 256614 | 1622766 ~ 1646549 (+) |
| LOC113523867 | tmem42,LOC108274871,LOC103045080,LOC107394544 | coding | upstream | 305405 | 1590858 ~ 1597758 (+) |
| LOC113523893 | mterf1 | coding | upstream | 362696 | 1534867 ~ 1540467 (+) |
| LOC113523877 | NA | coding | upstream | 398159 | 1496473 ~ 1505004 (+) |
| LOC113524921 | NA | coding | downstream | 69098 | 1973532 ~ 1998149 (+) |
| LOC113524922 | NA | coding | downstream | 101632 | 2006066 ~ 2033649 (+) |
| LOC113524923 | NA | coding | downstream | 132441 | 2036875 ~ 2053264 (+) |
| LOC113545587 | LOC108274833 | coding | downstream | 280289 | 2184723 ~ 2195601 (+) |
| lgals17 | LOC108274834 | coding | downstream | 302489 | 2206923 ~ 2217442 (+) |
| G142134 | NA | non-coding | upstream | 32654 | 1869549 ~ 1870509 (+) |
| G142122 | NA | non-coding | upstream | 46813 | 1851472 ~ 1856350 (+) |
| G142054 | LOC108274837,LOC108274818,LOC108274817 | non-coding | upstream | 70678 | 1819530 ~ 1832485 (+) |
| G142056 | LOC108274837,LOC108274817,LOC108274818 | non-coding | upstream | 83383 | 1784404 ~ 1819780 (+) |
| G142053 | LOC108274818,LOC108274817,LOC108274837 | non-coding | upstream | 107253 | 1762622 ~ 1795910 (+) |
| G142164 | atf6b | non-coding | downstream | 43447 | 1947881 ~ 1950347 (+) |
| LOC117597929 | LOC108274864,LOC108274865 | non-coding | downstream | 94822 | 1999256 ~ 2003137 (+) |
| LOC117598183 | NA | non-coding | downstream | 114375 | 2018809 ~ 2022140 (+) |
| G142301 | NA | non-coding | downstream | 148024 | 2052458 ~ 2052691 (+) |
| G142302 | NA | non-coding | downstream | 150565 | 2054999 ~ 2103929 (+) |
| LOC113523891 | ehmt2 | other | upstream | 280373 | 1615143 ~ 1622790 (+) |
| G142093 | LOC108274838 | other | upstream | 289827 | 1611511 ~ 1613336 (+) |
| dus3l | dus3l | other | upstream | 343253 | 1548257 ~ 1559910 (+) |
| G141825 | LOC108274854,LOC108279645 | other | upstream | 693290 | 938715 ~ 1209873 (+) |
| LOC113524920 | NA | other | downstream | 150597 | 2055031 ~ 2085878 (+) |
| LOC113545687 | NA | other | downstream | 164804 | 2069238 ~ 2183053 (+) |
| LOC117597926 | NA | other | downstream | 365616 | 2270050 ~ 2271586 (+) |
| LOC117598179 | NA | other | downstream | 374645 | 2279079 ~ 2279887 (+) |
| LOC117598174 | NA | other | downstream | 383664 | 2288098 ~ 2291206 (+) |
