G142302


Basic Information

Item Value
gene id G142302
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 2054999 ~ 2103929 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU168464
CTCGCACATCAGTTTCCTAAAGGCAGTTGATGATGTGGGGTCTCTCTGTAACCTGTCTCctgctctgtgtctctgtaCACACGGCTCACAGTGACAGCGTCAGTGAGGAGAACGAGTCCACACAGACGACTCCGACTAGAAGAACCAGCACCAGAGTGACTCACACTGAAAATGGAGCTTCTCAAAACAACATTCCCAAGAGCAGTACAGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU168464 True 212 lncRNA 0.50 2 2054999 2103929

Neighbor

gene id symbol gene type direction distance location
LOC113524923 NA coding upstream 1735 2036875 ~ 2053264 (+)
LOC113524922 NA coding upstream 21350 2006066 ~ 2033649 (+)
LOC113524921 NA coding upstream 56850 1973532 ~ 1998149 (+)
slc44a4 NA coding upstream 372206 1647724 ~ 1682793 (+)
ehmt2 ehmt2 coding upstream 408450 1622766 ~ 1646549 (+)
LOC113545587 LOC108274833 coding downstream 80794 2184723 ~ 2195601 (+)
lgals17 LOC108274834 coding downstream 102994 2206923 ~ 2217442 (+)
LOC113545586 NA coding downstream 122992 2226921 ~ 2239299 (+)
LOC113545612 NA coding downstream 145557 2249486 ~ 2255836 (+)
LOC117598027 NA coding downstream 153611 2257540 ~ 2259474 (+)
G142301 NA non-coding upstream 2308 2052458 ~ 2052691 (+)
LOC117598183 NA non-coding upstream 32859 2018809 ~ 2022140 (+)
LOC117597929 LOC108274864,LOC108274865 non-coding upstream 51862 1999256 ~ 2003137 (+)
G142164 atf6b non-coding upstream 104652 1947881 ~ 1950347 (+)
G142157 NA non-coding upstream 150565 1903163 ~ 1904434 (+)
LOC113545551 NA non-coding downstream 116638 2220567 ~ 2226796 (+)
G142391 NA non-coding downstream 176431 2280360 ~ 2286141 (+)
G142385 NA non-coding downstream 195055 2298984 ~ 2301918 (+)
LOC117598178 NA non-coding downstream 195247 2299176 ~ 2300055 (+)
G142411 NA non-coding downstream 254870 2358799 ~ 2359457 (+)
LOC113523891 ehmt2 other upstream 432209 1615143 ~ 1622790 (+)
G142093 LOC108274838 other upstream 441663 1611511 ~ 1613336 (+)
dus3l dus3l other upstream 495089 1548257 ~ 1559910 (+)
G141825 LOC108274854,LOC108279645 other upstream 845126 938715 ~ 1209873 (+)
LOC117597926 NA other downstream 166121 2270050 ~ 2271586 (+)
LOC117598179 NA other downstream 175150 2279079 ~ 2279887 (+)
LOC117598174 NA other downstream 184169 2288098 ~ 2291206 (+)
LOC117598173 NA other downstream 191230 2295159 ~ 2297706 (+)
LOC117595676 LOC108274861 other downstream 231280 2335209 ~ 2357993 (+)

Expression


Co-expression Network