LOC113545551


Basic Information

Item Value
gene id LOC113545551
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 2220567 ~ 2226796 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU168530
CAGACACGACACTGTTAACGACAGCAGAACCTCCTAAACTCTACTCATAAACTTTATCTAAATCGTACTGTATCACAAGAAATATTCTTCCAGCTCCAAGaaaATCTGCAGACACTCTGCAAGAGTCTTACAGGCATCATGACCCTCCTTTATATTTACATCTTATGGGTCGCTGCCTGTGTGGACTCCATCAGTGCAGATCCTCTCATTACTCTATCAGCTCAAGTGGGTTCCACAGTCGTCCTGCCATGTAACCTGAGAAGAACGTTCACTGAAAGCTTAAGTGTTCAGTGGAGCACCAATTATAAGACAGTGTTTAAGCGAGGCTTTTATAGTATGATAGTGGGTTCAGGATATGAAGATCGTGTGGAGATTCCTGAAGAcgagctagaaaaaaaaaaactgttcccTGGTGTTGACGAACGTCAGAGTCACTGATGGCGGTCTCTATGTCAGCACTGTGGTTGAACCCATAAACATTCGTCACTTTTACAGAGAGCGAGAAATCACCAAGGTTGAACTCTCAGTTTATGCCTTTTGGAACATATCAGCTGAAGTGGGTTCCACAGTTGTCCTGCCATGTGAATGGAGAAATCTGACCAACTATGCACCTCATGTTGAGTGGTATATCGATTCTGAGATTGTGTTTGAGCGAAATGATAAAGAGTCATTTCAGGGTGAGGGATATAAGGATCGTGTGGACGTTCCTGAGGACGAGCTGCTTAAAGGAAACTGTTCCCTGGTGTTGAAGAACTTCAGTGCTACTGATGCTGCTGTCTACAGAAGCTCCCTGGTAGTGAAACACTCAAAGAAACCTGTCTTGGTCCAGACAGTTAAACTCTCAGTCTACGgTGAAGCTGGAATAAATTGCCCTCGCCCGCTGATCCTCATCATTTCCCTCCTCATGTGTTTAGTCTTGTCACTACTGATGGGTCGTTCATGAacgatttattcattttgaacaAATCTTTTTTGTTGTGACTGAGAGAGTGATTCATTTATCCTTTCATTCATTGGAAACCTGAAAACCTCATAGGCTCTGTACAGGAAACAGAAATGATTAGTTCACCTCCTGAGTCCCTACTCTGGCCCTATTCCTTTGTTCACTTATCATATGATGTGACAGTCACATATATTCTGTATTGGATGCATTAGTTCATAATTCCCAACCTTCCTTACAAACAAGCAGGTagttaggttttatttttactctacAGTTACATGACACATTTCTGGTCTCaaattttagcttttttatcTCTTATATTTTGTGAGTTTCTATCTTGATGGTTGTTTTCCCTAACACTGAATCTGGTAATAAAGAGTTAGTTAAAGCTTTAAACTTTTCAGTACGCGGCTGTCATGTGACAAAATTATGAACAACTCAAACCAGAAGACCCAGTTGAGTTGTGaattaatcatttctgtttctcaTAATTTGTCCTTTCTGCATTATCCTTTTTTCCTTATTCGGAATATAATCAAAGTCTGCGTAAGTAGACATGTTTGTGGAATTTGGCTAttgaaaatgtatcattttaatttaattctacaaatgaacaaaatgagcGAAATGACTTACAATAAAGATTCGTTCATTTTGCTGAATGAGATTCAAAGATCCAAGTCAGTAAAATGATGTGATCTTCCCATCACTACTTCTCATACTCAGGAAACATCAGCGTGATCTCTCTCAGAGACTTCTGTGAGCCCAAGAGATCCAGctcatatatttaatttaaaaaaaaagaaacaaagatggtttcagtgtgttttgtctACATTGTCAACTCTGAGGTACATGAGAACATTTCTGATTGATGCCCACATAAATCTTTAATGCTAAAATACCACAATATCAGCACAGGAGAAAGACTCAGTATTACCAAGAGCATGGTGGCTTGTCTCGTCTgctttgtaatatttataagcttataaataataatgctacTGTAACAATCAGTACTCAGAGGTTTGAGGCTCTATGTGTGGCTCCAAGTccacagtaaacaaaaaaaaacccacaatccAGAAAGCTAGGCcaaaaaaaggtcaaaaggGTCATAGTGAGGTCAAAGGGCAAATCCAAGAGAAGAATTGATAAAGCAAGGCAAGGATCAAGgtacaccaatcagccaaaCACATGAAGAAAGGCTTAGATCTTATACTCAAGAGCCAAAATATCCTTATACACACTTAATGTGTAGTTtgcacatgtactgtatatactgtgcaaacaggaagtggaatcATGAATCATGTTCAATACTCTGGGTGCAGGAGGAGACATGACCTGAGCTGATGTTCcagctgctattattattattattattattattaaaagtatatTACAGAAACAGAACCACTGAGGTGCTATTACAGCTCATACAATGTCAGTCAAATCCTTATTAAACCTCAGAACTGCCTGAGAGACACAGTTTGGTGTCTACTACAGTTACAGCTCAGATCAGTGGTTGGATTAAATTTGATCATATCTTTAATCATCTGCCagacaaataaa
>TU168532
CAGACACGACACTGTTAACGACAGCAGAACCTCCTAAACTCTACTCATAAACTTTATCTAAATCGTACTGTATCACAAGAAATATTCTTCCAGCTCCAAGaaaATCTGCAGACACTCTGCAAGAGTCTTACAGGCATCATGACCCTCCTTTATATTTACATCTTATGGGTCGCTGCCTGTGTGGACTCCATCAGTGCAGATCCTCTCATTACTCTATCAGCTCAAGTGGGTTCCACAGTCGTCCTGCCATGTAACCTGAGAAGAACGTTCACTGAAAGCTTAAGTGTTCAGTGGAGCACCAATTATAAGACAGTGTTTAAGCGAGGCTTTTATAGTATGATAGTGGGTTCAGGATATGAAGATCGTGTGGAGATTCCTGAAGAcgagctagaaaaaaaaaaactgttcccTGGTGTTGACGAACGTCAGAGTCACTGATGGCGGTCTCTATGTCAGCACTGTGGTTGAACCCATAAACATTCGTCACTTTTACAGAGAGCGAGAAATCACCAAGGTTGAACTCTCAGTTTATGCCTTTTGGAACATATCAGCTGAAGTGGGTTCCACAGTTGTCCTGCCATGTGAATGGAGAAATCTGACCAACTATGCACCTCATGTTGAGTGGTATATCGATTCTGAGATTGTGTTTGAGCGAAATGATAAAGAGTCATTTCAGGGTGAGGGATATAAGGATCGTGTGGACGTTCCTGAGGACGAGCTGCTTAAAGGAAACTGTTCCCTGGTGTTGAAGAACTTCAGTGCTACTGATGCTGCTGTCTACAGAAGCTCCCTGGTAGTGAAACACTCAAAGAAACCTGTCTTGGTCCAGACAGTTAAACTCTCAGTCTACGgTGAAGCTGGAATAAATTGCCCTCGCCCGCTGATCCTCATCATTTCCCTCCTCATGTGTTTAGTCTTGTCACTACTGATGGGTCGTTCATGAacgatttattcattttgaacaAATCTTTTTTGTTGTGACTGAGAGAGTGATTCATTTATCCTTTCATTCATTGGAAACCTGAAAACCTCATAGGCTCTGTACAGGAAACAGAAATGATTAGTTCACCTCCTGAGTCCCTACTCTGGCCCTATTCCTTTGTTCACTTATCATATGATGTGACAGTCACATATATTCTGTATTGGATGCATTAGTTCATAATTCCCAACCTTCCTTACAAACAAGCAGGTagttaggttttatttttactctacAGTTACATGACACATTTCTGGTCTCaaattttagcttttttatcTCTTATATTTTGTGAGTTTCTATCTTGATGGTTGTTTTCCCTAACACTGAATCTGGTAATAAAGAGTTAGTTAAAGCTTTAAACTTTTCAGTACGCGGCTGTCATGTGACAAAATTATGAACAACTCAAACCAGAAGACCCAGTTGAGTTGTGaattaatcatttctgtttctcaTAATTTGTCCTTTCTGCATTATCCTTTTTTCCTTATTCGGAATATAATCAAAGTCTGCGTAAGTAGACATGTTTGTGGAATTTGGCTAttgaaaatgtatcattttaatttaattctacaaatgaacaaaatgagcGAAATGACTTACAATAAAGATTCGTTCATTTTGCTGAATGAGATTCAAAGATCCAAGTCAGTAAAATGATGTGATCTTCCCATCACTACTTCTCATACTCAGGAAACATCAGCGTGATCTCTCTCAGAGACTTCTGTGAGCCCAAGAGATCCAGctcatatatttaatttaaaaaaaaagaaacaaagatggtttcagtgtgttttgtctACATTGTCAACTCTGAGGTACATGAGAACATTTCTGATTGATGCCCACATAAATCTTTAATGCTAAAATACCACAATATCAGCACAGGAGAAAGTGAGGTCAAAGGGCAAATCCAAGAGAAGAATTGATAAAGCAAGGCAAGGATCAAGgtacaccaatcagccaaaCACATGAAGAAAGGCTTAGATCTTATACTCAAGAGCCAAAATATCCTTATACACACTTAATGTGTAGTTtgcacatgtactgtatatactgtgcaaacaggaagtggaatcATGAATCATGTTCAATACTCTGGGTGCAGGAGGAGACATGACCTGAGCTGATGTTCcagctgctattattattattattattattattaaaagtatatTACAGAAACAGAACCACTGAGGTGCTATTACAGCTCATACAATGTCAGTCAAATCCTTATTAAACCTCAGAACTGCCTGAGAGACACAGTTTGGTGTCTACTACAGTTACAGCTCAGATCAGTGGTTGGATTAAATTTGATCATATCTTTAATCATCTGCCagacaaataaa
>XR_004578679.1
ATCcaataatgtaatttatagcTGTCCGTCCCTCACCCTCATGAGCAAGAGAAAGTAAATGATACCTATAGGCTATAAATGCTTCTGTAGGCTGCAGTCAGTCGCTGTTCAGACACGACACTGTTAACGACAGCAGAACCTCCTAAACTCTACTCATAAACTTTATCTAAATCGTACTGTATCACAAGAAATATTCTTCCAGCTCCAAGaaaATCTGCAGACACTCTGCAAGAGTCTTACAGGCATCATGACCCTCCTTTATATTTACATCTTATGGGTCGCTGCCTGTGTGGACTCCATCAGTGCAGATCCTCTCATTACTCTATCAGCTCAAGTGGGTTCCACAGTCGTCCTGCCATGTAACCTGAGAAGAACGTTCACTGAAAGCTTAAGTGTTCAGTGGAGCACCAATTATAAGACAGTGTTTAAGCGAGGCTTTTATAGTATGATAGTGGGTTCAGGATATGAAGATCGTGTGGAGATTCCTGAAGAcgagctagaaaaaaaaaaactgttcccTGGTGTTGACGAACGTCAGAGTCACTGATGGCGGTCTCTATGTCAGCACTGTGGTTGAACCCATAAACATTCGTCACTTTTACAGAGAGCGAGAAATCACCAAGGTTGAACTCTCAGTTTATGCCTTTTGGAACATATCAGCTGAAGTGGGTTCCACAGTTGTCCTGCCATGTGAATGGAGAAATCTGACCAACTATGCACCTCATGTTGAGTGGTATATCGATTCTGAGATTGTGTTTGAGCGAAATGATAAAGAGTCATTTCAGGGTGAGGGATATAAGGATCGTGTGGACGTTCCTGAGGACGAGCTGCTTAAAGGAAACTGTTCCCTGGTGTTGAAGAACTTCAGTGCTACTGATGCTGCTGTCTACAGAAGCTCCCTGGTAGTGAAACACTCAAAGAAACCTGTCTTGGTCCAGACAGTTAAACTCTCAGTCTACGgTGAAGCTGGAATAAATTGCCCTCGCCCGCTGATCCTCATCATTTCCCTCCTCATGTGTTTAGTCTTGTCACTACTGATGGGTCGTTCATGAacgatttattcattttgaacaAATCTTTTTTGTTGTGACTGAGAGAGTGATTCATTTATCCTTTCATTCATTGGAAACCTGAAAACCTCATAGGCTCTGTACAGGAAACAGAAATGATTAGTTCACCTCCTGAGTCCCTACTCTGGCCCTATTCCTTTGTTCACTTATCATATGATGTGACAGTCACATATATTCTGTATTGGATGCATTAGTTCATAATTCCCAACCTTCCTTACAAACAAGCAGGTagttaggttttatttttactctacAGTTACATGACACATTTCTGGTCTCaaattttagcttttttatcTCTTATATTTTGTGAGTTTCTATCTTGATGGTTGTTTTCCCTAACACTGAATCTGGTAATAAAGAGTTAGTTAAAGCTTTAAACTTTTCAGTACGCGGCTGTCATGTGACAAAATTATGAACAACTCAAACCAGAAGACCCAGTTGAGTTGTGaattaatcatttctgtttctcaTAATTTGTCCTTTCTGCATTATCCTTTTTTCCTTATTCGGAATATAATCAAAGTCTGCGTAAGTAGACATGTTTGTGGAATTTGGCTAttgaaaatgtatcattttaatttaattctacaaatgaacaaaatgagcGAAATGACTTACAATAAAGATTCGTTCATTTTGCTGAATGAGATTCAAAGATCCAAGTCAGTAAAATGATGTGATCTTCCCATCACTACTTCTCATACTCAGGAAACATCAGCGTGATCTCTCTCAGAGACTTCTGTGAGCCCAAGAGATCCAGctcatatatttaatttaaaaaaaaagaaacaaagatggtttcagtgtgttttgtctACATTGTCAACTCTGAGGTACATGAGAACATTTCTGATTGATGCCCACATAAATCTTTAATGCTAAAATACCACAATATCAGCACAGGAGAAAGACTCAGTATTACCAAGAGCATGGTGGCTTGTCTCGTCTgctttgtaatatttataagcttataaataataatgctacTGTAACAATCAGTACTCAGAGGTTTGAGGCTCTATGTGTGGCTCCAAGTccacagtaaacaaaaaaaaacccacaatccAGAAAGCTAGGCcaaaaaaaggtcaaaaggGTCATAGTGAGGTCAAAGGGCAAATCCAAGAGAAGAATTGATAAAGCAAGGCAAGGATCAAGgtacaccaatcagccaaaCACATGAAGAAAGGCTTAGATCTTATACTCAAGAGCCAAAATATCCTTATACACACTTAATGTGTAGTTtgcacatgtactgtatatactgtgcaaacaggaagtggaatcATGAATCATGTTCAATACTCTGGGTGCAGGAGGAGACATGACCTGAGCTGATGTTCcagctgctattattattattattattattattaaaagtatatTACAGAAACAGAACCACTGAGGTGCTATTACAGCTCATACAATGTCAGTCAAATCCTTATTAAACCTCAGAACTGCCTGAGAGACACAGTTTGGTGTCTACTACAGTTACAGCTCAGATCAGTGGTTGGATTAAATTTGATCATATCTTTAATCATCTGCCagacaaataaagtgaaatatgaATCATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU168530 False 2521 lncRNA 0.39 5 2220676 2226779
TU168532 False 2328 lncRNA 0.39 6 2220676 2226779
XR_004578679.1 True 2647 lncRNA 0.39 5 2220567 2226796

Neighbor

gene id symbol gene type direction distance location
lgals17 LOC108274834 coding upstream 3125 2206923 ~ 2217442 (+)
LOC113545587 LOC108274833 coding upstream 24966 2184723 ~ 2195601 (+)
LOC113524923 NA coding upstream 167303 2036875 ~ 2053264 (+)
LOC113524922 NA coding upstream 186918 2006066 ~ 2033649 (+)
LOC113524921 NA coding upstream 222418 1973532 ~ 1998149 (+)
LOC113545586 NA coding downstream 125 2226921 ~ 2239299 (+)
LOC113545612 NA coding downstream 22690 2249486 ~ 2255836 (+)
LOC117598027 NA coding downstream 30744 2257540 ~ 2259474 (+)
LOC117598176 NA coding downstream 46795 2273591 ~ 2274763 (+)
LOC117598177 NA coding downstream 50203 2276999 ~ 2277996 (+)
G142305 NA non-coding upstream 95171 2084785 ~ 2125396 (+)
G142302 NA non-coding upstream 116638 2054999 ~ 2103929 (+)
G142301 NA non-coding upstream 167876 2052458 ~ 2052691 (+)
LOC117598183 NA non-coding upstream 198427 2018809 ~ 2022140 (+)
LOC117597929 LOC108274864,LOC108274865 non-coding upstream 217430 1999256 ~ 2003137 (+)
G142391 NA non-coding downstream 53564 2280360 ~ 2286141 (+)
G142385 NA non-coding downstream 72188 2298984 ~ 2301918 (+)
LOC117598178 NA non-coding downstream 72380 2299176 ~ 2300055 (+)
G142411 NA non-coding downstream 132003 2358799 ~ 2359457 (+)
G142429 NA non-coding downstream 145328 2372124 ~ 2372355 (+)
LOC113545687 NA other upstream 37514 2069238 ~ 2183053 (+)
LOC113524920 NA other upstream 134689 2055031 ~ 2085878 (+)
LOC113523891 ehmt2 other upstream 597777 1615143 ~ 1622790 (+)
G142093 LOC108274838 other upstream 607231 1611511 ~ 1613336 (+)
dus3l dus3l other upstream 660657 1548257 ~ 1559910 (+)
LOC117597926 NA other downstream 43254 2270050 ~ 2271586 (+)
LOC117598179 NA other downstream 52283 2279079 ~ 2279887 (+)
LOC117598174 NA other downstream 61302 2288098 ~ 2291206 (+)
LOC117598173 NA other downstream 68363 2295159 ~ 2297706 (+)
LOC117595676 LOC108274861 other downstream 108413 2335209 ~ 2357993 (+)

Expression


Co-expression Network