G142411


Basic Information

Item Value
gene id G142411
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 2358799 ~ 2359457 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU168606
AGCGCTCTGCTCGGTGTCTTTAGTGACTACAGTATCAGCGCTATGAATGTCTTCAGCTTCACCTGCTCTAAAGGTGCTCATGTGACTTGGAGCTGTTCAGGTTGTTCCTAAACTCTGTTTGCAGTTAAACTGtcagtaaaatgaataaattacattttaacacTTATTCTCTTcctctcattcattttttttatatgtacttATATTTCTTCCTTTTAGGTCTTCTATTAGCATTTCACAAGAAGTTTGCACATTTCCCACTCCATGAGACTCTGCAATATTATAAATACGATTTCTAAACCAATTCCTGTGAATTCAAACGAGTCACAGTGATTTCTTTGGAGAAAAACATGAGCAGGGACAGAACATCATGACCCAAGGAACAGACACGTGTACATCATGAGTGAACAAAGACTAACTAAATCACACTAACTTGAATtgatcttaaaataaataaatcatttatccGTTAACAAATACtggtagaaaaaaataatcacataataTTGATGAGAACATTTGCAACTTCATTCTCTTAGTACAGCAGAATAACTGgagattcattaaaaataaaaaaatatttatttttatttcataaaaatattaagacccgtttttaaattaattattaattaatcattatacatttttatttcata

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU168606 True 659 lncRNA 0.31 1 2358799 2359457

Neighbor

gene id symbol gene type direction distance location
LOC117598085 NA coding upstream 56037 2301366 ~ 2302762 (+)
LOC117598175 NA coding upstream 64283 2293389 ~ 2294516 (+)
LOC117598177 NA coding upstream 80803 2276999 ~ 2277996 (+)
LOC117598176 NA coding upstream 84036 2273591 ~ 2274763 (+)
LOC117598027 NA coding upstream 99325 2257540 ~ 2259474 (+)
LOC117598106 NA coding downstream 15242 2374699 ~ 2383793 (+)
LOC117598108 NA coding downstream 190848 2550305 ~ 2552377 (+)
LOC117598063 NA coding downstream 309670 2669127 ~ 2676154 (+)
LOC117598059 LOC108274858,LOC108274862 coding downstream 393972 2753429 ~ 2756267 (+)
LOC117598055 NA coding downstream 534030 2893487 ~ 2898257 (+)
G142385 NA non-coding upstream 56881 2298984 ~ 2301918 (+)
LOC117598178 NA non-coding upstream 58744 2299176 ~ 2300055 (+)
G142391 NA non-coding upstream 72658 2280360 ~ 2286141 (+)
LOC113545551 NA non-coding upstream 132003 2220567 ~ 2226796 (+)
G142305 NA non-coding upstream 233403 2084785 ~ 2125396 (+)
G142429 NA non-coding downstream 12667 2372124 ~ 2372355 (+)
G142420 NA non-coding downstream 31887 2391344 ~ 2396251 (+)
G142433 NA non-coding downstream 42466 2401923 ~ 2671465 (+)
G142435 NA non-coding downstream 58497 2417954 ~ 2434347 (+)
LOC117598110 NA non-coding downstream 60517 2419974 ~ 2429915 (+)
LOC117595676 LOC108274861 other upstream 806 2335209 ~ 2357993 (+)
LOC117598173 NA other upstream 61093 2295159 ~ 2297706 (+)
LOC117598174 NA other upstream 67593 2288098 ~ 2291206 (+)
LOC117598179 NA other upstream 78912 2279079 ~ 2279887 (+)
LOC117597926 NA other upstream 87213 2270050 ~ 2271586 (+)
LOC117598105 NA other downstream 13766 2373223 ~ 2558727 (+)
LOC113523823 NA other downstream 71688 2431145 ~ 3032526 (+)
LOC117598104 LOC108274858,LOC108274862,LOC108261310,LOC108274845 other downstream 115701 2475158 ~ 2477958 (+)
LOC117598067 NA other downstream 200354 2559811 ~ 2808637 (+)
LOC117598057 NA other downstream 328338 2687795 ~ 2692842 (+)

Expression


Co-expression Network