G142420


Basic Information

Item Value
gene id G142420
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 2391344 ~ 2396251 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU168637
CATTATTCTtaaatattatatcattatatattatatggttAAAAGATAAAAGTTATAGTATTACTAATGTGAAACATTGCAAAGATCAGACAGAATCTTGTTCATTTTTGTGGAGAGATGAAGTTAATAAAgggtgtgtttaaaaaaagtaatggagtaaaataaagtaatggAGTAAATTATTAGTGAGTCTGACTTGCAGATAACCCACAGTGTAAATCACTTTACCATCAAGTGCACATACAGaagatttatgatttatgattgtgCCAGGATGatacaataatgtttttttttcttttagtttcccctcttaaagaaacaaacagaaatatttcaccCGCTCCCACAGGTGATGCAGGAATGAAGATTCCTCACCCACTGATCATGGTCTTGACCCTCATCTCACGTTTACTCCTCCAGCTCGTCTATGAAGAAACATGAGTGTGACCTACAGCTTTGCACAGGACTCTGTGTTTCAATCCCACACCTACCGAAAAAAAGCTGCTTTTAAATTACACACGGCAATTCTGTGgtgctgaccaatcaggactCAGGAGGCATAACTAAGGGTTTCTGTGTTCTAGCAGATATTATAGCAGTATTTGTTAGGAAGGTTAATGTCTCCTGTCAGAAGGTTACAGCCAGTAGCTGACTGgactaaaaatattatttattaagcaTTAAAGCACAATTTGCACTGCTGTTATGGTAAAATAGTGAGTGATGTGAAGCGagttgccaatgattacaatgtttgcaagtttacaattttttaaaaaatctctccTTATGgcaaacttcaccatatcaatgattacacgttttttaatccgttaatgtggagcatctgccatacaaggccctgtgaatgagctgttactatagaaacgatatgtATTACAGTGAGGAAGTATCAAAGTACAAGTATAAAATTAGTGTAACAGTATGAAatagtgatttttatttttccccatatGCTGCCTGTGTCTCCCTAAACAATATTTCCTCTGTATGTCTTTAATTTCTCCCTGTTCTTGTTTCTATACAAGTAGTGACAATCCTGACAGACACTTCTCGTGTTTACTTGGGGACCAGGTGAAAGAGGGTGTCCTGTGTGAGTCTTGTCTgcaagtgaagtgaagtgtactgtagtgtgcacACACCTTCAACACCAAACAACTGATCACAACGATTCAAGTCATGTAAGGTGGAATGGTCAGCGATTCAGACATACTGAAGGTCCTGTCGTGTGCACTCAGCATTAGTGTGACTGGACTTTGTTTCAGAATTGTACTTGAGCAGGATTTTGTTCCGGACAAACCAGTTTGTTCTTCTCATAGTGTGCCGTATCAAACGATTTCCACTTATCTGCACTTTACTCTGGGTTAAGCTGGTTTTACAATGTGCAGTTATAGCAGCcctttataattattataattgtcACATTATATATAGAGATGAGCCCAAAAACGTTTTATCAGAATAACAGTCTGTGCGAtaagactgtgtgtgttcttcacGACAggttatatgatgaagatcctagCGCTACGATTTAAAAATTACTATGTTCTGATATACTGGGATGCGCTGTGATGCAGCACAGGTTAGAAGCTCTTTAACTGGACAGCAAGAAATAGTTTCATGTTgtcttattaataaataaactgtgtaATCCTAAGAAGTCCTCTTATTGGCGGATGTTAGGTGTGTCGTAGCAGGGCTCACACTGAGACTTTAATCAAAACTTTGTTGTCAGCTGTCTTTGGTCCTAGTGATGCTAAATCTGCACCagtgagcatgtcacattatgcaTTGTAAGAGCACGGCTCTCTACTCCTGACCAAAGTTTCTCCTTTACAGTGTGCGATGTGACAGCAAAACTGGGCTGAAAATGGTACAGCGTAAAGCTGGATTTACACTAAATGGAGCTGATCTACACT

Function

GO: NA

KEGG:

id description
ko04064 NF-kappa B signaling pathway
ko04658 Th1 and Th2 cell differentiation

RNA

RNA id representative length rna type GC content exon number start site end site
TU168637 True 1946 lncRNA 0.38 3 2391344 2396251

Neighbor

gene id symbol gene type direction distance location
LOC117598106 NA coding upstream 7551 2374699 ~ 2383793 (+)
LOC117598085 NA coding upstream 88582 2301366 ~ 2302762 (+)
LOC117598175 NA coding upstream 96828 2293389 ~ 2294516 (+)
LOC117598177 NA coding upstream 113348 2276999 ~ 2277996 (+)
LOC117598176 NA coding upstream 116581 2273591 ~ 2274763 (+)
LOC117598108 NA coding downstream 154054 2550305 ~ 2552377 (+)
LOC117598063 NA coding downstream 272876 2669127 ~ 2676154 (+)
LOC117598059 LOC108274858,LOC108274862 coding downstream 357178 2753429 ~ 2756267 (+)
LOC117598055 NA coding downstream 497236 2893487 ~ 2898257 (+)
LOC113523850 NA coding downstream 659372 3055623 ~ 3061337 (+)
G142429 NA non-coding upstream 18989 2372124 ~ 2372355 (+)
G142411 NA non-coding upstream 31887 2358799 ~ 2359457 (+)
G142385 NA non-coding upstream 89426 2298984 ~ 2301918 (+)
LOC117598178 NA non-coding upstream 91289 2299176 ~ 2300055 (+)
G142391 NA non-coding upstream 105203 2280360 ~ 2286141 (+)
G142433 NA non-coding downstream 5672 2401923 ~ 2671465 (+)
G142435 NA non-coding downstream 21703 2417954 ~ 2434347 (+)
LOC117598110 NA non-coding downstream 23723 2419974 ~ 2429915 (+)
G142418 NA non-coding downstream 34299 2430550 ~ 2482509 (+)
G142436 NA non-coding downstream 37008 2433259 ~ 2640505 (+)
LOC117595676 LOC108274861 other upstream 33351 2335209 ~ 2357993 (+)
LOC117598173 NA other upstream 93638 2295159 ~ 2297706 (+)
LOC117598174 NA other upstream 100138 2288098 ~ 2291206 (+)
LOC117598179 NA other upstream 111457 2279079 ~ 2279887 (+)
LOC117597926 NA other upstream 119758 2270050 ~ 2271586 (+)
LOC113523823 NA other downstream 34894 2431145 ~ 3032526 (+)
LOC117598104 LOC108274858,LOC108274862,LOC108261310,LOC108274845 other downstream 78907 2475158 ~ 2477958 (+)
LOC117598067 NA other downstream 163560 2559811 ~ 2808637 (+)
LOC117598057 NA other downstream 291544 2687795 ~ 2692842 (+)
LOC113523845 NA other downstream 987929 3384180 ~ 3396067 (+)

Expression


Co-expression Network