LOC117598111


Basic Information

Item Value
gene id LOC117598111
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 2487186 ~ 2497632 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU168638
ctttgaacccctgaaaatggaggtactttgttgaaaatggctgtaattcctaaatggtaaatgccatatttttgtggaacctcttaaaataaagctgaaagtctacactatatatatatatatatatctcacacacacacacacacacacaatattttacaattGGGCAGCATGTAAACGTTTTGTAGTAGTAACAGACAGTCCACTGCTTCAATCCACTGTTATATTCTCTGGATTCTTTcattatattatgttaatattttttctttagtcTACATAACTGATTCTGTCGGTAATCATTACAGCCTTATCACTGATCATGACTGACACCAGAAGTTTAAAGGCCTGTTTAATGGCATCATCAGTGTTTCTCAGTTCAGGTTGAGAATCGCTACTCAACATACTTTAGACTTTTTACCCAATACAGCTGTGCAgctaataaaatatcaaattaaatttGACCTTTGTGATGTGTATGGTCTGTTTATTTTAACTATAGAGTCATATTAGCTTGCTAACTTAGTCACGGCTAATGGACTCAGTATCCACAGACTCTGTACGTGTTTgtaattgtgtttttatgttttcttccTGCATTCCACTGCACAAAGAATCACCCACACAGCCAGCTGCCACAGATGATGGAGGAATGAACGCTTCTCCCACTCTGATGATGGTCGTATCCCTCCTCTTATTAGCCAGTCATTTCAGCACAATAACATGACAGGCATACTTTATGTTgattttttccttcattcttcTTATTAGGCAAAATAGTCGGTCAGATTTTGTGAACATTTCAGCTCGAGGTACGAGAGTGTACTGTTACCAGTTGCTGGTGTTTCTTTTACACTGGGTAACGATTTGGCAGGGAGTAAAGTACTTTCCCTTCCTGAAGTGACCCGTTCACTACAAGTGAAGGTGTCCTTACCCAGCAGTATCCCTAGTGTTCCCTACTTGTCTGCTCACCTGTGTTCTTCATGTGAACAGCTTGAACTTGAACTAGGTGTGCGGTTACGCCTGATGGGAAGCTCTGGTACGTTATGTTAGGCGATGACTGTTGACTTCATCTGTCACTGCTCATTACTATATACTAAAATTCTTGCATGTTTGTACATTTCTACCTTTTTACTTCATACTTTGTATGGTGTTACCTCCATGATCGTATTTCTGTCTGTACTTTATTCCTTTGTATGTTGCGGCCAGttcttcggtgcttggccccctaataacaataatacattCTCTTAAAAGATGTTttagtaaatgtatttttatttggattaatGCTTTATAGTGTCTCTTTAAACTcgccatttttaaatgtaaaggattataaaaacatttagccTGTACACTCATAAACACtgaactgttgtgtgtttaatgtgaaacTTTGCGTGTTGAGTTCAGAGTCTGGGCTCATCTGCTTTGTCTGTATGtagtatgttt
>XR_004578833.1
tttacaccagtatttacataagtacacttgtgaaaactggtagtgaataatgatgaatatgaagaaccttgagaatgtagaatataatgacagctttctaaatgatagcttcCTTGTAGAAGTGTAATGTTATCGTAAGGATTAAGTTGTTTCTCTTCATGAATATAAGCCATCCAAGAAAGAAACTTCAAGATGTAAACCCCTCTCTTAGTTCACAAGCAGGCAAAAGTGTTCTACGGTGTTGGTGTCGATGTCGATGGATGCATTAAACATCTGTGAACGGAACCTCAGCCTTCGCGTTGTGACTAAGGGCGGCATACCCAATACGATGCAAATGGAAAAAAGCAGGTCATGATGCCCTGATACTGTCTGGAAAAGCagAATGAAAGATTCAACAGGTGAACTAATTCCAGTACAGAACCTATAGGATGTTGCGGATGCGCGACTGAACGGATCACTTCCCGAGATGGAATGACCCATCACTACGAAAGACAGAGACAGCGCCAGTGTGTTACAGCGGAGAGTGAGAGGGTGTACAGATTTCTTTCCTGCTGTTCTAAAGAATCACCCACACAGCCAGCTGCCACAGATGATGGAGGAATGAACGCTTCTCCCACTCTGATGATGGTCGTATCCCTCCTCTTATTAGCCAGTCATTTCAGCACAATAACATGACAGGCATACTTTATGTTgattttttccttcattcttcTTATTAGGCAAAATAGTCGGTCAGATTTTGTGAACATTTCAGCTCGAGGTACGAGAGTGTACTGTTACCAGTTGCTGGTGTTTCTTTTACACTGGGTAACGATTTGGCAGGGAGTAAAGTACTTTCCCTTCCTGAAGTGACCCGTTCACTACAAGTGAAGGTGTCCTTACCCAGCAGTATCCCTAGTGTTCCCTACTTGTCTGCTCACCTGTGTTCTTCATGTGAACAGCTTGAACTTGAACTAGGTGTGCGGTTACGCCTGATGGGAAGCTCTGGTACGTTATGTTAGGCGATGACTGTTGACTTCATCTGTCACTGCTCATTACTATATACTAAAATTCTTGCATGTTTGTACATTTCTACCTTTTTACTTCATACTTTGTATGGTGTTACCTCCATGATCGTATTTCTGTCTGTACTTTATTCCTTTGTATGTTGCGGCCAGttcttcggtgcttggccccctaataacaataatacattCTCTTAAAAGATGTTttagtaaatgtatttttatttggattaatGCTTTATAGTGTCTCTTTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU168638 True 1452 lncRNA 0.38 2 2495996 2497632
XR_004578833.1 False 1259 lncRNA 0.41 5 2487186 2497488

Neighbor

gene id symbol gene type direction distance location
LOC117598106 NA coding upstream 103393 2374699 ~ 2383793 (+)
LOC117598085 NA coding upstream 184424 2301366 ~ 2302762 (+)
LOC117598175 NA coding upstream 192670 2293389 ~ 2294516 (+)
LOC117598177 NA coding upstream 209190 2276999 ~ 2277996 (+)
LOC117598176 NA coding upstream 212423 2273591 ~ 2274763 (+)
LOC117598108 NA coding downstream 52673 2550305 ~ 2552377 (+)
LOC117598063 NA coding downstream 171495 2669127 ~ 2676154 (+)
LOC117598059 LOC108274858,LOC108274862 coding downstream 255797 2753429 ~ 2756267 (+)
LOC117598055 NA coding downstream 395855 2893487 ~ 2898257 (+)
LOC113523850 NA coding downstream 557991 3055623 ~ 3061337 (+)
G142437 NA non-coding upstream 1798 2433614 ~ 2485388 (+)
G142418 NA non-coding upstream 4677 2430550 ~ 2482509 (+)
G142441 NA non-coding upstream 17004 2464284 ~ 2470182 (+)
G142435 NA non-coding upstream 52839 2417954 ~ 2434347 (+)
LOC117598110 NA non-coding upstream 57271 2419974 ~ 2429915 (+)
G142443 NA non-coding downstream 43618 2541250 ~ 2555657 (+)
G142445 NA non-coding downstream 66860 2564492 ~ 2571547 (+)
G142446 NA non-coding downstream 81982 2579614 ~ 3008692 (+)
G142451 NA non-coding downstream 101961 2599593 ~ 2701711 (+)
LOC117598069 NA non-coding downstream 144212 2641844 ~ 2832344 (+)
LOC117598104 LOC108274858,LOC108274862,LOC108261310,LOC108274845 other upstream 9228 2475158 ~ 2477958 (+)
LOC117595676 LOC108274861 other upstream 129193 2335209 ~ 2357993 (+)
LOC117598173 NA other upstream 189480 2295159 ~ 2297706 (+)
LOC117598174 NA other upstream 195980 2288098 ~ 2291206 (+)
LOC117598179 NA other upstream 207299 2279079 ~ 2279887 (+)
LOC117598067 NA other downstream 62179 2559811 ~ 2808637 (+)
LOC117598057 NA other downstream 190163 2687795 ~ 2692842 (+)
LOC113523845 NA other downstream 886548 3384180 ~ 3396067 (+)
G142576 NA other downstream 900038 3397670 ~ 3462171 (+)
fhl3b fhl3,LOC108438237,LOC107734040,LOC107551770,LOC107681628 other downstream 1987201 4484833 ~ 4509248 (+)

Expression


Co-expression Network