G142437


Basic Information

Item Value
gene id G142437
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 2433614 ~ 2485388 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU168655
TTCAGCTACACAGTTCCTGCTATCTGGGGTAAAGACATTCTGATTTAAAACTCTAGAGCACACTCgtgtaatgaaaattatttagatttaaagttGTGAGAGGGCGTCTACAagtgtgtgatgaaacagaaattcacagatggtcaggtgttctctgttctcctctctcaatctaacacacacatgaagagcTTTGTAATTAGCTGCTCAGTGCAGAAGTTCTCAACTAGgactgaaaacactgacattatcTTTAAATATGAACCGCTTTTGTTATACAGTAAGCTTAGTGCCTTTCCAATCATTCAGTATGTCCAGCTTTGTTTTCTGATGTGTGTAACGGTCAGTGTGTGTTCTACTGACACTAACTCACTTACCCTGGACTGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU168655 True 388 lncRNA 0.39 2 2433614 2485388

Neighbor

gene id symbol gene type direction distance location
LOC117598106 NA coding upstream 49821 2374699 ~ 2383793 (+)
LOC117598085 NA coding upstream 130852 2301366 ~ 2302762 (+)
LOC117598175 NA coding upstream 139098 2293389 ~ 2294516 (+)
LOC117598177 NA coding upstream 155618 2276999 ~ 2277996 (+)
LOC117598176 NA coding upstream 158851 2273591 ~ 2274763 (+)
LOC117598108 NA coding downstream 64917 2550305 ~ 2552377 (+)
LOC117598063 NA coding downstream 183739 2669127 ~ 2676154 (+)
LOC117598059 LOC108274858,LOC108274862 coding downstream 268041 2753429 ~ 2756267 (+)
LOC117598055 NA coding downstream 408099 2893487 ~ 2898257 (+)
LOC113523850 NA coding downstream 570235 3055623 ~ 3061337 (+)
LOC117598110 NA non-coding upstream 3699 2419974 ~ 2429915 (+)
G142420 NA non-coding upstream 37363 2391344 ~ 2396251 (+)
G142429 NA non-coding upstream 61259 2372124 ~ 2372355 (+)
G142411 NA non-coding upstream 74157 2358799 ~ 2359457 (+)
LOC117598178 NA non-coding upstream 133559 2299176 ~ 2300055 (+)
LOC117598111 NA non-coding downstream 1798 2487186 ~ 2497632 (+)
G142443 NA non-coding downstream 55862 2541250 ~ 2555657 (+)
G142445 NA non-coding downstream 79104 2564492 ~ 2571547 (+)
G142446 NA non-coding downstream 94226 2579614 ~ 3008692 (+)
G142451 NA non-coding downstream 114205 2599593 ~ 2701711 (+)
LOC117595676 LOC108274861 other upstream 75621 2335209 ~ 2357993 (+)
LOC117598173 NA other upstream 135908 2295159 ~ 2297706 (+)
LOC117598174 NA other upstream 142408 2288098 ~ 2291206 (+)
LOC117598179 NA other upstream 153727 2279079 ~ 2279887 (+)
LOC117597926 NA other upstream 162028 2270050 ~ 2271586 (+)
LOC117598067 NA other downstream 74423 2559811 ~ 2808637 (+)
LOC117598057 NA other downstream 202407 2687795 ~ 2692842 (+)
LOC113523845 NA other downstream 898792 3384180 ~ 3396067 (+)
G142576 NA other downstream 912282 3397670 ~ 3462171 (+)
fhl3b fhl3,LOC108438237,LOC107734040,LOC107551770,LOC107681628 other downstream 1999445 4484833 ~ 4509248 (+)

Expression


Co-expression Network