G142440


Basic Information

Item Value
gene id G142440
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 2456518 ~ 2720848 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU168658
AGAATAACCGAAAAAAAAACCCcgtaaactgtaaatataaataaatgaacgtCAGTCTGTGAGAGatgttagcttagcttagcttaactTCTCATCTCAGTTCAAACAATATACGAAAAGgTTTGTTCGCTTctagtaaatgtaaacacaggAATAAAACCACACAACAAACCGAAAAGTCTTACACTTccgttaaaaaaagaaaacaaaacacgaATTACCTTTAGAACAGC

Function

NR:

description
PREDICTED: uncharacterized protein LOC107397203

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU168658 True 233 lncRNA 0.33 2 2456518 2720848

Neighbor

gene id symbol gene type direction distance location
LOC117598106 NA coding upstream 72725 2374699 ~ 2383793 (+)
LOC117598085 NA coding upstream 153756 2301366 ~ 2302762 (+)
LOC117598175 NA coding upstream 162002 2293389 ~ 2294516 (+)
LOC117598177 NA coding upstream 178522 2276999 ~ 2277996 (+)
LOC117598176 NA coding upstream 181755 2273591 ~ 2274763 (+)
LOC117598059 LOC108274858,LOC108274862 coding downstream 32581 2753429 ~ 2756267 (+)
LOC117598055 NA coding downstream 172639 2893487 ~ 2898257 (+)
LOC113523850 NA coding downstream 334775 3055623 ~ 3061337 (+)
rps18 rps18,LOC107726165,LOC107693766 coding downstream 397440 3118288 ~ 3123714 (+)
slc39a7 slc39a7,LOC107395789 coding downstream 425190 3146038 ~ 3153846 (+)
G142435 NA non-coding upstream 22171 2417954 ~ 2434347 (+)
LOC117598110 NA non-coding upstream 26603 2419974 ~ 2429915 (+)
G142420 NA non-coding upstream 60267 2391344 ~ 2396251 (+)
G142429 NA non-coding upstream 84163 2372124 ~ 2372355 (+)
G142411 NA non-coding upstream 97061 2358799 ~ 2359457 (+)
LOC117598070 NA non-coding downstream 36878 2757726 ~ 2762429 (+)
G142458 NA non-coding downstream 69751 2790599 ~ 2791137 (+)
G142469 NA non-coding downstream 136082 2856930 ~ 2993966 (+)
G142478 NA non-coding downstream 230219 2951067 ~ 2993474 (+)
G142502 NA non-coding downstream 382571 3103419 ~ 3104643 (+)
LOC117595676 LOC108274861 other upstream 98525 2335209 ~ 2357993 (+)
LOC117598173 NA other upstream 158812 2295159 ~ 2297706 (+)
LOC117598174 NA other upstream 165312 2288098 ~ 2291206 (+)
LOC117598179 NA other upstream 176631 2279079 ~ 2279887 (+)
LOC117597926 NA other upstream 184932 2270050 ~ 2271586 (+)
LOC113523845 NA other downstream 663332 3384180 ~ 3396067 (+)
G142576 NA other downstream 676822 3397670 ~ 3462171 (+)
fhl3b fhl3,LOC108438237,LOC107734040,LOC107551770,LOC107681628 other downstream 1763985 4484833 ~ 4509248 (+)
gpx3 gpx3 other downstream 3020059 5740907 ~ 5747944 (+)
LOC113547098 deptor,LOC108274614,LOC108442483,LOC107685573 other downstream 3866363 6587211 ~ 6593605 (+)

Expression


Co-expression Network