LOC117598104 (LOC108274858,LOC108274862,LOC108261310,LOC108274845)


Basic Information

Item Value
gene id LOC117598104
gene name LOC108274858,LOC108274862,LOC108261310,LOC108274845
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 2475158 ~ 2477958 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU168661
GAAAAGAGCAGAATGTCTTCAGACTCACTTACCGCTCTGATACTTTACTGATATCTCTGTGCTCCTCTGCGTGTTTCAGAAGATCAACATCGTGAGACTGATCACTCAGACGCACAGCAGTCTGCACCTCCTGCACACTGTggagatattattattattattataatcctgtcgtgtgtgtgtgtggtctctgtTTCAATAAGCATCACCTGCTCCTCTCTGTACTGTTCCAGTCTACAAGATAAGTGTTCTTTCACCGGGGACTCGGATGAGAAGGTAGCAGAAAAACAAGGAAATGTAGTTGATAGAAGGCAGTGCTCAGATCATGTCTCTATAAAAGCAGACTAAAAATGTCACATTATCAGATGTTTCTCTGTGCAGGAAGTGGACCTGCAGCTGTCTGATTTGACCTCTGTGACCTACACATGTGTCTCCTGACGGCCCAGAAAACATTAGCAACaatttataaagtttatataaaCACATGGACAGAGGTGTGGTGCAGTTTcctgcttttatttctgtacttTTATAGGGTTTATAGACCTTATATTGCTAATAGTTGCACATGATTTGTACTGCTTTTGTAGAGCTTTACTCTGTCATTGTCTATAAGATTAAAATGTAAGGAGGAATACCATGTTTCAACCGCACAGTGTTTCTTTAAACAGGCAGTGAATGGCGCTTTGAGATTGAATATGACTTGTACATAGTCAGATGGTGatgaaattcaattcaattcatttttatttgtatagcgctttttacaaaggtcattgtctcaaagcagctttacacaaacaaaagtaaagtgaagtgtgtgtgtgtgccgtctctgatgagcaagcagggcgacggtggcaaggaaaaactccctgagatggtgataggaagaaaccttgagaggaaccaggctcaacagagaacccatcctcatatgggtttacactgtagtgtgcgtgtgtgtgagcacaatgtgtgttggtgtagtccatggaaaacagctgaagcgttttcgtggcagtatgaagcattgccggtggacaggtccagagtgaagggggggaggtctggattaccagcagctcaggagtgatgctcatctggtccagagcgtaggggggtctggatcaccggcagctcaggagtgtagctcggcagaaggagaaggaaagtggttaggtacactcacagtcaccgtgtggagataaaactcaacatccacgagtccccagatctactcctttgataaaacactagtcgctaaatgctaggttaaataaataagtcttcaac
>TU168662
ggagggtgtgtgtgagacatggcCAAACTCCTGTCTACATTTATTCTACAGATGCTGTTTGCTTTCTTTACACCGTGTCTCCTTCAGATTGCTTCAACTGATCATTTATCTGTCCATCCTGGAGAGAGCATCATCCTGCTCTGTAACATCACTAATTATTCTGAGATATCATGGTATCGACTGAGATCTGAGGAGGTGAAGCTGCTGATATCTGCTGTAAAAGGGAACCTGAAGAAACAGTTTATCCTCAGTTATAATGTGAACGTGAGTCACTTTGATATAACAGAAAGCAGCAGTTCAGTCAGTTTAGTGATTATTGGAGTTAGAGAGACAGATCTGGGATTTTATTACTGTGGAGGTCAAAACAAAACGACACATATTCAGTTTGGGAAACCCATCAGACTGAACTTTACAgGAAGTGGACCTGCAGCTGTCTGATTTGACCTCTGTGACCTACACATGTGTCTCCTGACGGCCCAGAAAACATTAGCAACaatttataaagtttatataaaCACATGGACAGAGGTGTGGTGCAGTTTcctgcttttatttctgtacttTTATAGGGTTTATAGACCTTATATTGCTAATAGTTGCACATGATTTGTACTGCTTTTGTAGAGCTTTACTCTGTCATTGTCTATAAGATTAAAATGTAAGGAGGAATACCATGTTTCAACCGCACAGTGTTTCTTTAAACAGGCAGTGAATGGCGCTTTGAGATTGAATATGACTTGTACATAGTCAGATGGTGatgaaattcaattcaattcatttttatttgtatagcgctttttacaaaggtcattgtctcaaagcagctttacacaaacaaaagtaaagtgaagtgtgtgtgtgtgccgtctctgatgagcaagcagggcgacggtggcaaggaaaaactccctgagatggtgataggaagaaaccttgagaggaaccaggctcaacagagaacccatcctcatatgggtttacactgtagtgtgcgtgtgtgtgagcacaatgtgtgttggtgtagtccatggaaaacagctgaagcgttttcgtggcagtatgaagcattgccggtggacaggtccagagtgaagggggggaggtctggattaccagcagctcaggagtgatgctcatctggtccagagcgtaggggggtctggatcaccggcagctcaggagtgtagctcggcagaaggagaaggaaagtggttaggtacactcacagtcaccgtgtggagataaaactcaacatccacgagtccccagatctactcctttgataaaacactagtcgctaaatgctaggttaaataaataagtcttcaac
>XM_034307634.1
ctccacaAACTGAGTGTGAAACATCAGCACTTTTTCTCAGAGTgctggagggtgtgtgtgagacatggcCAAACTCCTGTCTACATTTATTCTACAGATGCTGTTTGCTTTCTTTACACCGTGTCTCCTTCAGATTGCTTCAACTGATCATTTATCTGTCCATCCTGGAGAGAGCATCATCCTGCTCTGTAACATCACTAATTATTCTGAGATATCATGGTATCGACTGAGATCTGAGGAGGTGAAGCTGCTGATATCTGCTGTAAAAGGGAACCTGAAGAAACAGTTTATCCTCAGTTATAATGTGAACGTGAGTCACTTTGATATAACAGAAAGCAGCAGTTCAGTCAGTTTAGTGATTATTGGAGTTAGAGAGACAGATCTGGGATTTTATTACTGTGGAGGTCAAAACAAAACGACACATATTCAGTTTGGGAAACCCATCAGACTGAACTTTACAgAAGATCAACATCGTGAGACTGATCACTCAGACGCACAGCAGTCTGCACCTCCTGCACACTGTggagatattattattattattataatcctgtcgtgtgtgtgtgtggtctctgtTTCAATAAGCATCACCTGCTCCTCTCTGTACTGTTCCAGTCTACAAGATAAGTGTTCTTTCACCGGGGACTCGGATGAGAAGGTAGCAGAAAAACAAGGAAATGTAGTTGATAGAAGGCAGTGCTCAGATCATGTCTCTATAAAAGCAGACTAAAAATGTCACATTATCAGATGTTTCTCTGTGCAGGAAGTGGACCTGCAGCTGTCTGATTTGACCTCTGTGACCTACACATGTGTCTCCTGACGGCCCAGAAAACATTAGCAACaatttataaagtttatataaaCACATGGACAGAGGTGTGGTGCAGTTTcctgcttttatttctgtacttTTATAGGGTTTATAGACCTTATATTGCTAATAGTTGCACATGATTTGTACTGCTTTTGTAGAGCTTTACTCTGTCATTGTCTATAAGATTAAAATGTAAGGAGGAATACCATGTTTCAACCGCACAGTGTTTCTTTAAACAGGCAGTGAATGGCGCTTTGAGATTGAATATGACTTGTACATAGTCAGATG
>XM_034307635.1
ctccacaAACTGAGTGTGAAACATCAGCACTTTTTCTCAGAGTgctggagggtgtgtgtgagacatggcCAAACTCCTGTCTACATTTATTCTACAGATGCTGTTTGCTTTCTTTACACCGTGTCTCCTTCAGATTGCTTCAACTGATCATTTATCTGTCCATCCTGGAGAGAGCATCATCCTGCTCTGTAACATCACTAATTATTCTGAGATATCATGGTATCGACTGAGATCTGAGGAGGTGAAGCTGCTGATATCTGCTGTAAAAGGGAACCTGAAGAAACAGTTTATCCTCAGTTATAATGTGAACGTGAGTCACTTTGATATAACAGAAAGCAGCAGTTCAGTCAGTTTAGTGATTATTGGAGTTAGAGAGACAGATCTGGGATTTTATTACTGTGGAGGTCAAAACAAAACGACACATATTCAGTTTGGGAAACCCATCAGACTGAACTTTACAgAAGATCAACATCGTGAGACTGATCACTCAGACGCACAGCAGTCTGCACCTCCTGCACACTGTggagatattattattattattataatcctgtcgtgtgtgtgtgtggtctctgtTTCAATAAGCATCACCTGCTCCTCTCTGTACTGTTCCAGTCTACAAGATAAGTGTTCTTTCACCGGGGACTCGGATGAGAAGGAAGTGGACCTGCAGCTGTCTGATTTGACCTCTGTGACCTACACATGTGTCTCCTGACGGCCCAGAAAACATTAGCAACaatttataaagtttatataaaCACATGGACAGAGGTGTGGTGCAGTTTcctgcttttatttctgtacttTTATAGGGTTTATAGACCTTATATTGCTAATAGTTGCACATGATTTGTACTGCTTTTGTAGAGCTTTACTCTGTCATTGTCTATAAGATTAAAATGTAAGGAGGAATACCATGTTTCAACCGCACAGTGTTTCTTTAAACAGGCAGTGAATGGCGCTTTGAGATTGAATATGACTTGTACATAGTCAGATG

Function

NR:

description
PREDICTED: uncharacterized protein LOC108261310 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU168661 False 1296 lncRNA 0.43 2 2476434 2477958
TU168662 True 1330 TUCP 0.43 3 2475204 2477958
XM_034307634.1 False 1102 mRNA 0.40 4 2475158 2477382
XM_034307635.1 False 997 mRNA 0.41 5 2475158 2477382

Neighbor

gene id symbol gene type direction distance location
LOC117598106 NA coding upstream 91365 2374699 ~ 2383793 (+)
LOC117598085 NA coding upstream 172396 2301366 ~ 2302762 (+)
LOC117598175 NA coding upstream 180642 2293389 ~ 2294516 (+)
LOC117598177 NA coding upstream 197162 2276999 ~ 2277996 (+)
LOC117598176 NA coding upstream 200395 2273591 ~ 2274763 (+)
LOC117598108 NA coding downstream 72347 2550305 ~ 2552377 (+)
LOC117598063 NA coding downstream 191169 2669127 ~ 2676154 (+)
LOC117598059 LOC108274858,LOC108274862 coding downstream 275471 2753429 ~ 2756267 (+)
LOC117598055 NA coding downstream 415529 2893487 ~ 2898257 (+)
LOC113523850 NA coding downstream 577665 3055623 ~ 3061337 (+)
G142441 NA non-coding upstream 4976 2464284 ~ 2470182 (+)
G142435 NA non-coding upstream 40811 2417954 ~ 2434347 (+)
LOC117598110 NA non-coding upstream 45243 2419974 ~ 2429915 (+)
G142420 NA non-coding upstream 78907 2391344 ~ 2396251 (+)
G142429 NA non-coding upstream 102803 2372124 ~ 2372355 (+)
LOC117598111 NA non-coding downstream 9228 2487186 ~ 2497632 (+)
G142443 NA non-coding downstream 63292 2541250 ~ 2555657 (+)
G142445 NA non-coding downstream 86534 2564492 ~ 2571547 (+)
G142446 NA non-coding downstream 101656 2579614 ~ 3008692 (+)
G142451 NA non-coding downstream 121635 2599593 ~ 2701711 (+)
LOC117595676 LOC108274861 other upstream 117165 2335209 ~ 2357993 (+)
LOC117598173 NA other upstream 177452 2295159 ~ 2297706 (+)
LOC117598174 NA other upstream 183952 2288098 ~ 2291206 (+)
LOC117598179 NA other upstream 195271 2279079 ~ 2279887 (+)
LOC117597926 NA other upstream 203572 2270050 ~ 2271586 (+)
LOC117598067 NA other downstream 81853 2559811 ~ 2808637 (+)
LOC117598057 NA other downstream 209837 2687795 ~ 2692842 (+)
LOC113523845 NA other downstream 906222 3384180 ~ 3396067 (+)
G142576 NA other downstream 919712 3397670 ~ 3462171 (+)
fhl3b fhl3,LOC108438237,LOC107734040,LOC107551770,LOC107681628 other downstream 2006875 4484833 ~ 4509248 (+)

Expression


Co-expression Network