LOC117598069


Basic Information

Item Value
gene id LOC117598069
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 2641844 ~ 2832344 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU168675
CATCAAACAcagataaaatttaattgaaggAAATGTATAAGGGCTCTATATGTACACCACTGTACCTGCATGCTATAAAACCTGTTTGAGGTTCTAATTAGGTTCAACATTTAcagctaatttatttaatcttataGTCTGAATAATCAAATAcagttaatagtaataataagtgtatttattttctctacaACATACAACTGTTTTAAGGTAAAACATAacaataatgatataataaaaatgaaaataaacagaaaaatatctcTCCTACTTAATACTGTAGGCCTGTAGGATACATCACGCCCCAAAACAACAAGCTAGCGCTGTGATGGCGTACTGTATATGatgataaataatgataataaataaagtctgtGTTGTTCACGTTTCTCTACAACTGTTTAAACCACAGCTCCATCATGCTGGCTCATAACACCTTccaaacattttcacttttactcTCAAACTGTATATACTCTAAAAATACAGTTTGAGAAACTGCTGCAAATTTTCCAGAGAAATGTCATTTAACttgcttcctctttctctttttttccctttatgaactccagaattattggcacccttctgCAGATTAGaagaaatactgtataaaataaacagcacacaGCTATTTAAGTTTTCTATTCACAGTTCTTGTTGACTTTTGCTGAATTTATGTAGAAATACAGTTCATTGGATGTATATTGGCAATGATTGGTACAgtgcatatattttaaatttacaaattaaaatatgctACAGATACATATGAACTACTCCACCTGTTTAAAATGAGCGTTTCTAATTTGAGAATTGCCATCTTTAGGAATATTCAGTAGAATATGCATACAGTAAAAACAGCAGGTGCCGAGACACACGTTTTTCCCCCCAGTGTAAGAAACTAAGAAAAAGAGGTCATGATGTCCATTGTGCCCTCAGTGTGTGCAGATTTctacaacaaacaaatattatctaattatatagtataatattatattttaacaaacatattaaacacaaaGGTTTGAATTCAAGGCAAGATGGCCGAAGTCATGTCACTGTAAATCACCACCAGTTTCAGCAGCATCAAATACGTCAGAATATCCAGCCCTGAGGAGAACCGTTTAATAGTGTTCAAAACTTTTTGAGTGAAGACCAGGAGACTTGGGTTCTCTTCAGCAGGATTCTTTACTGAGAACACGCTGGTCGGTCGCTGCAGTCATCAAGTCTGACTAAGGCAGTGATACACTGTAGATTATATACATTTAGGGGCAGTGCCTAGAGATGAAGGCAAAGCACTAGGGTGGCGATCCTAAGCATGCAAATGAAGTAGACAGTTCTGGGCACCCGCCCCGTTTCACTGGTCTTAATTCAATCAACATAACTATCCTACTCAGACAGTTCATTATcatagaaacaaagaaaaatccacACCTGTGGGGGTACATTCAGGTATTGAGGAACACAAACAATGGTACCCAGTTCAAAGGATATGAAAGGAGCAACAGTTACAAAAAGGTGATAGTTACAGTATCTTGGTTCATTTGACTTATAAATAAAGGAACAAGAGTGGCAGAAACTATACATGTTGAGAAAGAATAGCTCTTTGTATTCCCACAATAGGAACACATTTAGCATCAACACATTATAGCAAAAGGATTTCTGGCAGAAAAATCTATAGCTCACTGTTACGCTCTCCGCCTGGACCACAACAAGAGGGAGGCAGCAGGTGGAGTTTGCTATTGCCAAAGACTACATTTAATACAGAACGCAAAACTATAGCATTAGACGGCTCATATCAGTAGTCAGTAATGTTGGGATGTTGTCTGGAGAGAAGattgagtggtgtgtgtgttgtgtgtcaagcaatttaaacaaatgagaGGAAGCTATCTTTAAAGCAGAGACGCACTGCATGCTGGTGAATCCCATCTAACGGATTAGAACAAACCCCTTCTGGTGAACCTGTAcacttaaaaacacacaaaacaggaccacaagcacagaaaaacagacgGCTTCTGCATTGTCACACTCACGCTAACAACACCACAGCAGCTTGCTAATCAGTGTGAGTGTGCTATAGCCTGGCTATATGAGACTAGCTAACTCTTCTACTGCAATGACCCGTATATTCAAGCTATTATAGAATTAAATTCTGTCATGATCTGGAAATGGACCTTTTCTAATTTATCTTACTTACTTTATCTTACTGTTTACATATCATTAGCTTGCTAGTTTGCCTGCTAGCTgttcaaatgtaaaataaaggcTAAAGACTTAAATCAAATGGTTCTTTAATCAAGACGGGCAGCATAAGACCAGGCTCTTTGTCCACTGGATATAAAATAACTGTCACTCACATGAAGTGGAACCACCAGTTAATGCATGAAGAGACTGTGTACAGTGATGAACAAAACCCAGCTCTTCTGCACACTGCCTAGGGCCGGTTCTAGACATTTGGAGGCCCTAGGCAAAATTTATATTGGAGGCCCCCTGGCCTCCTTCCCTCcacatttcagaataaataaaaagcacttgaaacaaataaaatttctaacttttttatttatacaaaacctGTTATCATTActtgtatatatttacttaaatgtgcatattaattaaactgtaactaaggtcaacactaaaaaaatatgaaaggtcATCTGGACCAgctcttcttattattattcctcGGCCATGGCCACAGCCACCTACAGAggcacttttctgcttttttttaagcaaagtcaTCAATAACTGCTTCATACGAAATCTGCTGGGCAAGTTCTCTGTTAATGCTGATTAAAGCAAGTCCACTAAGTCGTTCCTGATTCATTGTGGAACGCAGgatcatataatcatataaatcatattGAGCACCTGTGGGGCATCCTCAAGAGGAAGGTGGAGAAGCGCCATGTGCCTAACATCCAGCAGCTCCGTGATGTCATTATGGAGGAGTGGAAGAGGATCCCAGCAACAATCTGTGCAGCTCTGGTGAATTCCATGCCTAGGAGGATTAAGGAAGTGAGGCAGATCTCTTGGAGCGTCTCACTGTCTGGTAGCTCGTGTAGACACCTGCATCAGTAAGTGTCAGATACAGTGATCTCAGCTTCTGCAGAGAGGAGGCCTGAGATGGGAAATTAAATTCTAGATTAATCTGGACAGTGCACTTATTTTAAGATGCTCTTTACAATCCAAGACTGCAGCCTGACCACATATCATTTTACTGTACACAATAAGAGACTGcatacaaaacatacaaataatcACAACTCATTactgtgtgagtgaatgtgcaTGTGAATGACACCATCCTAGTTTGTTTATccacagcatgtttttaaatatataatcatatcatcatcatcatcatcatcatcacatcatgcATTCTCTGCGCATAGACACAACC
>XR_004578790.1
cacttttctgcttttttttaagcaaagtcaTCAATAACTGCTTCATACGAAATCTGCTGGGCAAGTTCTCTGTTAATGCTGATTAAAGCAAGTCCACTAAGTCGTTCCTGATTCATTGTGGAACGCAGgatcatataatcatataaatcatattGAGCACCTGTGGGGCATCCTCAAGAGGAAGGTGGAGAAGCGCCATGTGCCTAACATCCAGCAGCTCCGTGATGTCATTATGGAGGAGTGGAAGAGGATCCCAGCAACAATCTGTGCAGCTCTGGTGAATTCCATGCCTAGGAGGATTAAGGAAGTGAGGCAGATCTCTTGGAGCGTCTCACTGTCTGGTAGCTCGTGTAGACACCTGCATCAGTAAGTGTCAGATACAGTGATCTCAGCTTCTGCAGAGAGGAGGCCTGAGATGGGAAATTAAATTCTAGATTAATCTGGACAGTGCACTTATTTTAAGATGCTCTTTACAATCCAAGACTGCAGCCTGACCACATATCATTTTACTGTACACAATAAGAGACTGcatacaaaacatacaaataatcACAACTCATTactgtgtgagtgaatgtgcaTGTGAATGACACCATCCTAGTTTGTTTATccacagcatgtttttaaatatataatcatatcatcatcatcatcatcatcatcacatcatgcATTCTCTGCGCATAGACACAACCAGTGATGTCATGCATCTGTAACTACAGTGTATAACAGTTAAAGGTTTGGATTGTGATATGGAAAGCAGTCATGGGCTGCAGTTACAGACAGTGAAACTGCAGCAGCAATCAGACGCAACAGGCGCAAACTCTGTGTGCACGAGCGCGGAACATCACTGTAAGAAATGTGCTCTGCCCAGCTTCCACTCCAGAGTAGACAGGAAGCTGCAGATGCTTTAACCGCAGCAGTAACGCCATCGTGTATGGTGCAGCTCATAGAAGCATGAAGGCAGAAGAGCGACTGCAGATATCAGAATGATCCACATCATGTGAGATTACTAGTGCTGATGCATGGAGTTAATGTTAAAGAGCGACTGAATAACGTGGCATTCTCTCAGTTTCAGGGGTTTCAGTACCTCCATGGAGAGATGTGCGTTTCCGTTGGTTTTgaacatacttttttttgcacaggaTCAGGGATGTATGATAAAGGATAAAACAGTCATAACggtaactatttttatttatttattttttctatcttctaaaaaaaaaaagtcaatgagAAAGTCCTGTAAATCGATGAACTTTGTGACCTTCACAACACTTCCTCATTCTCATAAAACCACCTGAGTCCTGATGAAAGCCATCATCACATCTCACATAATCACATCTCATTTTAACtctcatcacatcatcacttctcacattttaatcatttcttacCTGAACAGATAATCCTAATAATTCAGTGTTACAATATAAATACCATTGAGGCTTACCTTGGAAGAAGAAGGAGAGCGAGCACGTGCCCAGCCATGCACATGTTTCTCTGCAgttcctttttttgttctttggggtttttttgttttttttgaccTGTGTGCATACCGCCTCCTACTGTCTTCAGGTCatggtttattattataaaaaaaataaattaaaaaaaaaacttgctccATGAGGGTTCAGCTCCTCCATCCTCCACACACAAGCTCTCAGGCTCCGGAGTGGAGCAGAGCATCACtacttcattttaatataaatcctTGCATTTAGTCTTGTACTATTATATTGAATATGTATTGAAAAAGAAACTCATATCCCAGTAGATATTCCAAGTCCTTCTCCTTCTTacccattttatttaaatatgttattaagTCCTTTCTCTCTTCGCTGTACCTTTCACAATCATATGTTGtgttctattgtttttttctcacaacAATACTCACATAAATCACTATCACCTTCTCCAGGTAAGAACAGTGAGGCATTCAGTCCTGAGTGACCAAGTCTTAGCCTAGTTATTATGACCTCTTCCTTCCTATTTCTACCACACATAGTTCTTTTAGTATCTaccaaatttttaattttatatcaaTGCCTTTCCTTAGTGTCCGTATTCCAAATTTCTTGCCGttcttttgtaatatttttcttaataataCTCTTAGATTCTCCTTTGCCTAAGGGCACATTGATGACCACTTCCTtcctttttaaagctttttttgttaGCTCATTCGCTGTTTTGTTTCCAGATATCCCTGCATGTGCTGGTACCCAGTAAACCTTTTTACTACTCCTTTTCTTTGTATACGCCATAATAACAAACATCTCACTCATCAAGTCTTCTCGAGATGATTGATGGGTAGATAGTGATGTTAAGACAGAAGCAGAATCAGAACATATCACCACTCTATCTATTTCCTCTACCCACATCAAACCTACTATGATAGCGACCATTTCAACAGCATATATAGATAACTCCAATGTTAATCTTTTAGTTATAGTTGTATCCAGATCTGGGATATACAGTGGTCCTttaaagtttgtgaaccctctataattttctatatatctgcata
>XR_004578791.1
aagagaattgattagttcatctctcgaGTCTTTCGAGTCGTTCGTTCTTTTGTCACGTGAAATGACAGCATTGGATAGAGAAATCAGTTAATTTACAACCTTCCTTACAAATgcatagtaattattattattattattattacgttaTAGTATTAGATAGACTTGTCAGATAAGAGGTGAGGTGAGCTAATCGTAGACTAAAGATCCaggatcatataatcatataaatcatattGAGCACCTGTGGGGCATCCTCAAGAGGAAGGTGGAGAAGCGCCATGTGCCTAACATCCAGCAGCTCCGTGATGTCATTATGGAGGAGTGGAAGAGGATCCCAGCAACAATCTGTGCAGCTCTGGTGAATTCCATGCCTAGGAGGATTAAGGAAGTGAGGCAGATCTCTTGGAGCGTCTCACTGTCTGGTAGCTCGTGTAGACACCTGCATCAGTAAGTGTCAGATACAGTGATCTCAGCTTCTGCAGAGAGGAGGCCTGAGATGGGAAATTAAATTCTAGATTAATCTGGACAGTGCACTTATTTTAAGATGCTCTTTACAATCCAAGACTGCAGCCTGACCACATATCATTTTACTGTACACAATAAGAGACTGcatacaaaacatacaaataatcACAACTCATTactgtgtgagtgaatgtgcaTGTGAATGACACCATCCTAGTTTGTTTATccacagcatgtttttaaatatataatcatatcatcatcatcatcatcatcatcacatcatgcATTCTCTGCGCATAGACACAACCAGTGATGTCATGCATCTGTAACTACAGTGTATAACAGTTAAAGGTTTGGATTGTGATATGGAAAGCAGTCATGGGCTGCAGTTACAGACAGTGAAACTGCAGCAGCAATCAGACGCAACAGGCGCAAACTCTGTGTGCACGAGCGCGGAACATCACTGTAAGAAATGTGCTCTGCCCAGCTTCCACTCCAGAGTAGACAGGAAGCTGCAGATGCTTTAACCGCAGCAGTAACGCCATCGTGTATGGTGCAGCTCATAGAAGCATGAAGGCAGAAGAGCGACTGCAGATATCAGAATGATCCACATCATGTGAGATTACTAGTGCTGATGCATGGAGTTAATGTTAAAGAGCGACTGAATAACGTGGCATTCTCTCAGTTTCAGGGGTTTCAGTACCTCCATGGAGAGATGTGCGTTTCCGTTGGTTTTgaacatacttttttttgcacaggaTCAGGGATGTATGATAAAGGATAAAACAGTCATAACggtaactatttttatttatttattttttctatcttctaaaaaaaaaaagtcaatgagAAAGTCCTGTAAATCGATGAACTTTGTGACCTTCACAACACTTCCTCATTCTCATAAAACCACCTGAGTCCTGATGAAAGCCATCATCACATCTCACATAATCACATCTCATTTTAACtctcatcacatcatcacttctcacattttaatcatttcttacCTGAACAGATAATCCTAATAATTCAGTGTTACAATATAAATACCATTGAGGCTTACCTTGGAAGAAGAAGGAGAGCGAGCACGTGCCCAGCCATGCACATGTTTCTCTGCAgttcctttttttgttctttggggtttttttgttttttttgaccTGTGTGCATACCGCCTCCTACTGTCTTCAGGTCatggtttattattataaaaaaaataaattaaaaaaaaaacttgctccATGAGGGTTCAGCTCCTCCATCCTCCACACACAAGCTCTCAGGCTCCGGAGTGGAGCAGAGCATCACtacttcattttaatataaatcctTGCATTTAGTCTTGTACTATTATATTGAATATGTATTGAAAAAGAAACTCATATCCCAGTAGATATTCCAAGTCCTTCTCCTTCTTacccattttatttaaatatgttattaagTCCTTTCTCTCTTCGCTGTACCTTTCACAATCATATGTTGtgttctattgtttttttctcacaacAATACTCACATAAATCACTATCACCTTCTCCAGGTAAGAACAGTGAGGCATTCAGTCCTGAGTGACCAAGTCTTAGCCTAGTTATTATGACCTCTTCCTTCCTATTTCTACCACACATAGTTCTTTTAGTATCTaccaaatttttaattttatatcaaTGCCTTTCCTTAGTGTCCGTATTCCAAATTTCTTGCCGttcttttgtaatatttttcttaataataCTCTTAGATTCTCCTTTGCCTAAGGGCACATTGATGACCACTTCCTtcctttttaaagctttttttgttaGCTCATTCGCTGTTTTGTTTCCAGATATCCCTGCATGTGCTGGTACCCAGTAAACCTTTTTACTACTCCTTTTCTTTGTATACGCCATAATAACAAACATCTCACTCATCAAGTCTTCTCGAGATGATTGATGGGTAGATAGTGATGTTAAGACAGAAGCAGAATCAGAACATATCACCACTCTATCTATTTCCTCTACCCACATCAAACCTACTATGATAGCGACCATTTCAACAGCATATATAGATAACTCCAATGTTAATCTTTTAGTTATAGTTGTATCCAGATCTGGGATATACAGTGGTCCTttaaagtttgtgaaccctctataattttctatatatctgcata

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU168675 True 3424 lncRNA 0.38 4 2641844 2830384
XR_004578790.1 False 2548 lncRNA 0.39 4 2823915 2832344
XR_004578791.1 False 2629 lncRNA 0.38 4 2824624 2832344

Neighbor

gene id symbol gene type direction distance location
LOC117598108 NA coding upstream 89467 2550305 ~ 2552377 (+)
LOC117598106 NA coding upstream 258051 2374699 ~ 2383793 (+)
LOC117598085 NA coding upstream 339082 2301366 ~ 2302762 (+)
LOC117598175 NA coding upstream 347328 2293389 ~ 2294516 (+)
LOC117598177 NA coding upstream 363848 2276999 ~ 2277996 (+)
LOC117598055 NA coding downstream 61143 2893487 ~ 2898257 (+)
LOC113523850 NA coding downstream 223279 3055623 ~ 3061337 (+)
rps18 rps18,LOC107726165,LOC107693766 coding downstream 285944 3118288 ~ 3123714 (+)
slc39a7 slc39a7,LOC107395789 coding downstream 313694 3146038 ~ 3153846 (+)
LOC117597933 LOC108279645 coding downstream 416180 3248524 ~ 3249755 (+)
G142436 NA non-coding upstream 1339 2433259 ~ 2640505 (+)
G142445 NA non-coding upstream 70297 2564492 ~ 2571547 (+)
G142443 NA non-coding upstream 86187 2541250 ~ 2555657 (+)
LOC117598111 NA non-coding upstream 144212 2487186 ~ 2497632 (+)
G142437 NA non-coding upstream 156456 2433614 ~ 2485388 (+)
G142469 NA non-coding downstream 24586 2856930 ~ 2993966 (+)
G142478 NA non-coding downstream 118723 2951067 ~ 2993474 (+)
G142502 NA non-coding downstream 271075 3103419 ~ 3104643 (+)
G142504 vps52,LOC107394440 non-coding downstream 277173 3109517 ~ 3110320 (+)
G142521 LOC108279645,LOC108274854 non-coding downstream 327102 3159446 ~ 3199331 (+)
LOC117598105 NA other upstream 83117 2373223 ~ 2558727 (+)
LOC117598104 LOC108274858,LOC108274862,LOC108261310,LOC108274845 other upstream 163886 2475158 ~ 2477958 (+)
LOC117595676 LOC108274861 other upstream 283851 2335209 ~ 2357993 (+)
LOC117598173 NA other upstream 344138 2295159 ~ 2297706 (+)
LOC117598174 NA other upstream 350638 2288098 ~ 2291206 (+)
LOC113523845 NA other downstream 551836 3384180 ~ 3396067 (+)
G142576 NA other downstream 565326 3397670 ~ 3462171 (+)
fhl3b fhl3,LOC108438237,LOC107734040,LOC107551770,LOC107681628 other downstream 1652489 4484833 ~ 4509248 (+)
gpx3 gpx3 other downstream 2908563 5740907 ~ 5747944 (+)
LOC113547098 deptor,LOC108274614,LOC108442483,LOC107685573 other downstream 3754867 6587211 ~ 6593605 (+)

Expression


Co-expression Network