G142469


Basic Information

Item Value
gene id G142469
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 2856930 ~ 2993966 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU168702
TGTTAGTTCTGTCCACGTGTTCCATCACAAAGGATTTATAGGCACCGTCATCAGTGATTCTGACGTTCTTCAACACCAGGGAACAGTTTCCTTTACGCAGTTCGTCTACAGGAACGTCCACACGTCCTTCATATCCTGAGCCTATATACTTACCATCACTGCTTCGGTCAAACACAACATCAACATCGGTGCGCCATCGAACGTGTGGTGTTTCTGTGAACTCCTTTCTCAGGTTACATGGCAGGACGACTGTGGAACCCACTCGAGCTGATACAGTAATGTGAGAATCTGCACTGATGGAATCTGTAGAGGGAAACATTACAATCTACATGATctgtagcattttattttatttgtagtaTATTTTAG
>TU168704
GTTAGTTCTGTCCACGTATTCCACCACAAAGGATTTATAGGCACCGTCATCAGTGATTCTGACGTTCTTCAACACCAGGGAACAGTTTCCTTTACGCAGCTCGTCTACAGGAACGTCCACACGTCCTTCATATCCTGAGCCTATATACTTACCATCACTGCTTCGGTCAAACACAACATCAACATCGGTGCGCCATCGAACGTGTGGTGTTTCTGTGAACTCCTTTCTCAGGTTACATGGCAGGACGACTGTGGAACCCACTCGAGCTGATACAGTAATGTGAGAATCTGCACTGATGGAATCTGTAGAGGGAAACATTACAATCTACATGATctgtagcattttattttatttgtagtaTATTTTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU168702 True 369 lncRNA 0.43 3 2856930 2993966
TU168704 False 368 lncRNA 0.44 2 2952074 2993966

Neighbor

gene id symbol gene type direction distance location
LOC117598059 LOC108274858,LOC108274862 coding upstream 100663 2753429 ~ 2756267 (+)
LOC117598063 NA coding upstream 180776 2669127 ~ 2676154 (+)
LOC117598108 NA coding upstream 304553 2550305 ~ 2552377 (+)
LOC117598106 NA coding upstream 473137 2374699 ~ 2383793 (+)
LOC117598085 NA coding upstream 554168 2301366 ~ 2302762 (+)
LOC113523850 NA coding downstream 61657 3055623 ~ 3061337 (+)
rps18 rps18,LOC107726165,LOC107693766 coding downstream 124322 3118288 ~ 3123714 (+)
slc39a7 slc39a7,LOC107395789 coding downstream 152072 3146038 ~ 3153846 (+)
LOC117597933 LOC108279645 coding downstream 254558 3248524 ~ 3249755 (+)
cratb cratb,LOC108274804,LOC108435838,LOC107561339,LOC107563340,LOC107758403,LOC107679039,LOC105903715 coding downstream 299833 3293799 ~ 3308324 (+)
LOC117598069 NA non-coding upstream 24586 2641844 ~ 2832344 (+)
G142458 NA non-coding upstream 65793 2790599 ~ 2791137 (+)
LOC117598070 NA non-coding upstream 94501 2757726 ~ 2762429 (+)
G142451 NA non-coding upstream 155219 2599593 ~ 2701711 (+)
LOC117598068 NA non-coding upstream 207018 2649433 ~ 2649912 (+)
G142502 NA non-coding downstream 109453 3103419 ~ 3104643 (+)
G142504 vps52,LOC107394440 non-coding downstream 115551 3109517 ~ 3110320 (+)
G142521 LOC108279645,LOC108274854 non-coding downstream 165480 3159446 ~ 3199331 (+)
LOC113523815 NA non-coding downstream 180772 3174738 ~ 3176983 (+)
LOC113523814 LOC108279645 non-coding downstream 189350 3183316 ~ 3184699 (+)
LOC117598067 NA other upstream 48293 2559811 ~ 2808637 (+)
LOC117598057 NA other upstream 164088 2687795 ~ 2692842 (+)
LOC117598105 NA other upstream 298203 2373223 ~ 2558727 (+)
LOC117598104 LOC108274858,LOC108274862,LOC108261310,LOC108274845 other upstream 378972 2475158 ~ 2477958 (+)
LOC117595676 LOC108274861 other upstream 498937 2335209 ~ 2357993 (+)
LOC113523845 NA other downstream 390214 3384180 ~ 3396067 (+)
G142576 NA other downstream 403704 3397670 ~ 3462171 (+)
fhl3b fhl3,LOC108438237,LOC107734040,LOC107551770,LOC107681628 other downstream 1490867 4484833 ~ 4509248 (+)
gpx3 gpx3 other downstream 2746941 5740907 ~ 5747944 (+)
LOC113547098 deptor,LOC108274614,LOC108442483,LOC107685573 other downstream 3593245 6587211 ~ 6593605 (+)

Expression


Co-expression Network