G142504 (vps52,LOC107394440)


Basic Information

Item Value
gene id G142504
gene name vps52,LOC107394440
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 3109517 ~ 3110320 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU168743
CTGCACTTTGAGCAGTCGGCTGCTGTAGGACTTGAAGTAGCTGTAGTAGATCTTGCTCATGGTGTCCACGTACTCGTCCCGGATTTCTTTCGCTACCGTCCTCTCGTTGGCCAACAGGAACTGGTAGAAGAACCtgtacttgagGAGTGTGTTCTGAGGAATCTGGTAGTTGGTCATGGGCTTCCTGAACGAGTAGATCTTCTGCAGGATGAACTCACGGATCTTACTGACCG

Function

symbol description
vps52 Predicted to enable syntaxin binding activity. Predicted to be involved in Golgi to vacuole transport; endosomal transport; and lysosomal transport. Predicted to act upstream of or within protein transport. Predicted to be located in Golgi apparatus. Predicted to be part of GARP complex. Orthologous to human VPS52 (VPS52 subunit of GARP complex).

NR:

description
PREDICTED: vacuolar protein sorting-associated protein 52 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU168743 True 233 lncRNA 0.51 2 3109517 3110320

Neighbor

gene id symbol gene type direction distance location
LOC113523850 NA coding upstream 48180 3055623 ~ 3061337 (+)
LOC117598055 NA coding upstream 211260 2893487 ~ 2898257 (+)
LOC117598059 LOC108274858,LOC108274862 coding upstream 353250 2753429 ~ 2756267 (+)
LOC117598063 NA coding upstream 433363 2669127 ~ 2676154 (+)
LOC117598108 NA coding upstream 557140 2550305 ~ 2552377 (+)
rps18 rps18,LOC107726165,LOC107693766 coding downstream 7968 3118288 ~ 3123714 (+)
slc39a7 slc39a7,LOC107395789 coding downstream 35718 3146038 ~ 3153846 (+)
LOC117597933 LOC108279645 coding downstream 138204 3248524 ~ 3249755 (+)
cratb cratb,LOC108274804,LOC108435838,LOC107561339,LOC107563340,LOC107758403,LOC107679039,LOC105903715 coding downstream 183479 3293799 ~ 3308324 (+)
ppt2b ppt2,LOC103364422 coding downstream 236252 3346572 ~ 3356643 (+)
G142502 NA non-coding upstream 4874 3103419 ~ 3104643 (+)
G142454 NA non-coding upstream 85107 2667058 ~ 3024410 (+)
G142446 NA non-coding upstream 100825 2579614 ~ 3008692 (+)
G142521 LOC108279645,LOC108274854 non-coding downstream 49126 3159446 ~ 3199331 (+)
LOC113523815 NA non-coding downstream 64418 3174738 ~ 3176983 (+)
LOC113523814 LOC108279645 non-coding downstream 72996 3183316 ~ 3184699 (+)
LOC113523831 LOC108279645,LOC108274854 non-coding downstream 81620 3191940 ~ 3193368 (+)
LOC117598030 LOC108274854,LOC108279645 non-coding downstream 87556 3197876 ~ 3199324 (+)
LOC113523823 NA other upstream 76991 2431145 ~ 3032526 (+)
LOC117598067 NA other upstream 300880 2559811 ~ 2808637 (+)
LOC117598057 NA other upstream 416675 2687795 ~ 2692842 (+)
LOC117598105 NA other upstream 550790 2373223 ~ 2558727 (+)
LOC117598104 LOC108274858,LOC108274862,LOC108261310,LOC108274845 other upstream 631559 2475158 ~ 2477958 (+)
LOC113523845 NA other downstream 273860 3384180 ~ 3396067 (+)
G142576 NA other downstream 287350 3397670 ~ 3462171 (+)
fhl3b fhl3,LOC108438237,LOC107734040,LOC107551770,LOC107681628 other downstream 1374513 4484833 ~ 4509248 (+)
gpx3 gpx3 other downstream 2630587 5740907 ~ 5747944 (+)
LOC113547098 deptor,LOC108274614,LOC108442483,LOC107685573 other downstream 3476891 6587211 ~ 6593605 (+)

Expression


Co-expression Network