G142521 (LOC108279645,LOC108274854)


Basic Information

Item Value
gene id G142521
gene name LOC108279645,LOC108274854
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 3159446 ~ 3199331 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU168768
ctgcagtGTGACGGAGGTTTTTGTACGACAGTTTCAGTAGAATGTATCACTGTGGAGGACTTTCAGTGGAGGCACCAAACTCATTGTGAACAAGGGTCCCTCCGTGTCTCTGCTCCCTCCGTCTCCTCTGCAGCCGTGTGAGGGATCGGCctcgctgctctgcctgctgtctgGCTACTCTCCACAGGGGGCGCTGGTGAGCTGGACAGTGGACGGCTCAGTGGTGAAGGACGGGGTTCTGACCAGcgcagaagaagagaagaagggcGGTTACACACGCAGTagcaccctgaccctcagcaaagacctctgggaaaagggggaggagttTGTCTGTACGGTCTCCCATGCCGGTGTCAATCATCCAGTCACGTTCAGAAAGAGTCAGTGTGAAGGCTAGTGGCTCCAAGAGAGAGTTTAACATAGAGCTGCTTATGATCCATCTACAATAGAGTTTCAATTCTACACAATGCTgccatttctgtctttactctgttcactgtcctgttgatcttcctgtagtttttgctgaaataaagctgaatttcGGA
>TU168769
cgctgatcaaagtcatggttgctgtgggtgaagttgctgagcagcagctctcagtcatgaagtgttaaagtcacagggctataaacactcgcagAGCACTGAAGCATGGACTGCcaatgcaaagtgtgtgtgtgtgtgtgtgtgcagtgtgagggAGGTTTTTGTACGATGGCTTCATTAGATTGTATCACTGTGGTACACTTTTGGTGAAGGCACCAGAATCATCATTAAAACTGGTCCCACAGTGAAGCCCTCCGTGTCTCTGCTCCCTCCGTCTCCTCTGCAGCTGTGTGAGGGATCGGCctcgctgctctgcctgctgtctgGCTACTCTCCACAGGGGGCGCTGGTGAGCTGGACAGTGGACGGCTCAGAGGTGAAGGACGGGGTTCTGACCAGcgcagaagaagagaagaagggcGGTTTCACACgcagcagcaccctgaccctcagcaaagACCTCTGGGAAAAAGCGGAGGAGTTTATCTGCACGGTCTCCCATGACAACATCAATCATCCAGTCACGTTCAGAAAGAGTCAGTGTGAAGGCTAGTGGCTCCAAGAGAGAGTTTAACATAGAGCTGCTTATGATCCATCTACAATAGAGTTTCAATTCTACACAATGCTgccatttctgtctttactctgttcactgtcctgttgatcttcctgtagtttttgctgaaataaagctgaatttcGGA
>TU168772
GTGAAGttgctgagcagcagctctcagtcatgaagtgttaaagccacagggctataaacactcgcagAGCACTGAAGCATGGACTGCaaatgcaaagtgtgtgtgtctgtgtgtgtctgtgtgtgtgtgtgtgtgtctgtgtgtgtgcgtgcactgCACTGTGAAGGAGGTTTTTGTACGATGGCTTCATTAGAATGTAACACTGTGGTGGGCTTTTGGTGGAGGCACCAGAATCATTGTGAACAAGGGTCCCTCCGTGTCTCTGCTCCCTCCGTCCCCTCTGCAGCTGTGTGAGGGATCGGCctcgctgctctgcctgctgtctgACTACTCTCCACAGGGGGCGCTGGTGAGCTGGACAGTGGACGGCTCAGAGGTGAAGGACGGGGTTCTGACCAGcgcagaagaagagaagaagggcGGTTACACACGCAGTagcaccctgaccctcagcaaagacctctgggaaaagggggaggagttTGTCTGTACGGTCTCCCATGCCGGTGTCAATCATCCAGTCACGTTCAGAAAGAGTCAGTGTGAAGGCTAGTGGCTCCAAGATAGAGTTTAACATAGAGCTGCTTATGATCCATCTACAATAGAGTTTCAATTCTACACAATGCTgccatttctgtctttactctgttcactgtcctgttgatcttcctgtagtttttgctgaaataaagctgaattttGG
>TU168773
GTGAAGttgctgagcagcagctctcagtcatgaagtgttaaagccacagggctataaacactcgcagAGCACTGAAGCATGGACTGCaaatgcaaagtgtgtgtgtctgtgtgtgtctgtgtgtgtgtgtgtgtgtctgtgtgtgtgcagtgcagtgtgaaGGAGGTTTTTGTACGATGGCTTCATTAGAATGTAACACTGTGGTGGGCTTTTGGTGGAGGCACCAGAATCATTGTGAACAAGGGTCCCTCCGTGTCTCTGCTCCCTCCGTCTCCTCTGCAGCTGTCTGAGGGATCGGCctcgctgctctgcctgctgtctgGCTACTCTCCACAGGGGGCGCTGGTGAGCTGGACAGTGGACGGCTCAGAGGTGAAGAACGGGGTTCTGACCAGtgcagaagaagagaagaagggcGGTTACACACGCAGCAGTaccctgaccctcagcaaagCAGTCTGGGAAAAGGCAGAGGAGTTTGTCTGTAAGGTCTCCCATAAAGGCATCAATTATCCGGTCAACTTCAGAAAGAGTCAGTGTGAAGGCTAGTGGCTCCAAGATAGATTTTAACATAGAGCTGCTTATGATCCATCTACAATAGAGTTTCAATTCTACACAATGCTgccatttctgtctttactctgttcactgtcctgttgctcttcctgtagtttttgctgaaataaagctgaattttG
>TU168774
AGCATGGACTGCcaatgcaaagtgtgtgtgtgtgtgtgtgtgtgtgcagtgcactGTGAAAGAGGTTTTTGTATGATGGTTTCATTAGATTGTATCACTGTGGAGGACTTTTGGTGGAGGCTCCAGAATCATCATTAAAACGGGTCCCACAGCTCCCTCCGTGTCTCTGCTCCCTCCGTCTCCTCTGCAGCTGTGTGAGGGATCGGCctcgctgctctgcctgctgtctgGCTACTCTCCACAGGGGGCGCTGGTGAGCTGGACAGTGGACGGCTCAGAGGTGAAGGACGGGGTTCTGACCAGtgcagaagaagagaagaagggcGGTTACACACGCAGTagcaccctgaccctcagcaaagacctctgggaaaagggggaggagttTATCTGCACGGCCTCCCATGACGGTGTGAATCATCCGGTCAAGTTCAGAAAGAGTCAGTGTGAAGGCTAGTGGCTCCAAGATAGAGTTTAACATAGAGCTGCTTATGATCCATCTACAATAGAGTTTCAATTCTACACAATGCTgccatttctgtctttactctgtTCACTGTCCTGTTGATCTTCCTGTAGCttttgctgaaataaagctgaatttcGGACGTTGtctgttcttttattagagttaatagtgatgatcagtgtgatgagagagtgggattagctgtagattcagtgctgtgttgtgcttcagtgagtttGACTGAAGGAAGCTGAACATCTG

Function

NR:

description
PREDICTED: tyrosine-protein phosphatase non-receptor type substrate 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU168768 False 551 lncRNA 0.52 3 3192111 3199331
TU168769 False 704 lncRNA 0.50 2 3197708 3199331
TU168772 False 703 lncRNA 0.51 4 3159446 3193362
TU168773 False 698 lncRNA 0.49 3 3159446 3176981
TU168774 True 730 lncRNA 0.49 2 3183318 3184821

Neighbor

gene id symbol gene type direction distance location
slc39a7 slc39a7,LOC107395789 coding upstream 5600 3146038 ~ 3153846 (+)
rps18 rps18,LOC107726165,LOC107693766 coding upstream 35732 3118288 ~ 3123714 (+)
LOC113523850 NA coding upstream 98109 3055623 ~ 3061337 (+)
LOC117598055 NA coding upstream 261189 2893487 ~ 2898257 (+)
LOC117598059 LOC108274858,LOC108274862 coding upstream 403179 2753429 ~ 2756267 (+)
LOC117597933 LOC108279645 coding downstream 49193 3248524 ~ 3249755 (+)
cratb cratb,LOC108274804,LOC108435838,LOC107561339,LOC107563340,LOC107758403,LOC107679039,LOC105903715 coding downstream 94468 3293799 ~ 3308324 (+)
ppt2b ppt2,LOC103364422 coding downstream 147241 3346572 ~ 3356643 (+)
rps5 rps5,LOC105903695 coding downstream 163069 3362400 ~ 3368547 (+)
LOC113523857 NA coding downstream 164884 3364215 ~ 3364348 (+)
G142504 vps52,LOC107394440 non-coding upstream 49126 3109517 ~ 3110320 (+)
G142502 NA non-coding upstream 54803 3103419 ~ 3104643 (+)
G142469 NA non-coding upstream 165480 2856930 ~ 2993966 (+)
G142478 NA non-coding upstream 165972 2951067 ~ 2993474 (+)
G142458 NA non-coding upstream 368309 2790599 ~ 2791137 (+)
LOC117598172 NA non-coding downstream 5130 3204461 ~ 3215786 (+)
trnac-gca_1 NA non-coding downstream 16646 3215977 ~ 3216048 (+)
trnac-gca_2 NA non-coding downstream 18087 3217418 ~ 3217489 (+)
trnac-gca_3 NA non-coding downstream 19818 3219149 ~ 3219220 (+)
G142524 NA non-coding downstream 29975 3229306 ~ 3230300 (+)
LOC113523823 NA other upstream 126920 2431145 ~ 3032526 (+)
LOC117598067 NA other upstream 350809 2559811 ~ 2808637 (+)
LOC117598057 NA other upstream 466604 2687795 ~ 2692842 (+)
LOC117598105 NA other upstream 600719 2373223 ~ 2558727 (+)
LOC117598104 LOC108274858,LOC108274862,LOC108261310,LOC108274845 other upstream 681488 2475158 ~ 2477958 (+)
LOC113523845 NA other downstream 184849 3384180 ~ 3396067 (+)
G142576 NA other downstream 198339 3397670 ~ 3462171 (+)
fhl3b fhl3,LOC108438237,LOC107734040,LOC107551770,LOC107681628 other downstream 1285502 4484833 ~ 4509248 (+)
gpx3 gpx3 other downstream 2541576 5740907 ~ 5747944 (+)
LOC113547098 deptor,LOC108274614,LOC108442483,LOC107685573 other downstream 3387880 6587211 ~ 6593605 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G138385 NA misc NC_053124.1 CM020921.1 33510148 ~ 33995534 (-)