LOC117598172


Basic Information

Item Value
gene id LOC117598172
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 3204461 ~ 3215786 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU168783
TGTTGAGGTGCCTGTGTCTTTAAGCTACAGCAACGGTGTTGTGTCGCACCTGTATGACATCACTAGATGCGACTGATTTGTGACAATTGTTAGCCTCGGAGCTCCTTTAAAAGCACGGCGTTGGCGATGCTAAGgAGTTGGGGGACGCCGGCAGGGAGGCTTGGCACCGGGTGGCTGGgtacctgtgtttgtgtgtgtttcacctttCTGGCAGTGTAGTGTCACCTGGGTGTGctgtgcagtgtatgtgtgcgctTCACGTGTGGTCTTTTTGGACCCTCCTTCCAGATCGCCTCCCTGTGAATACTGTAAAGAGAAAAACGTCTGTACCCTTGATTGTGGCAAGCTGACCAAAGATAGAGTGACCTGGGGCAAGGTCATTAATGGAAGAAGGACGGACATTTTAACCAATCATTACGGAAATGTTACGAGACGCTCTAACAAATTCAGTCGCTACAGTTCAAAAGCGAATTCACTGAAGATATCCAAAGTAACGCACTCGGACGCTGGAAGATTTTACTGCAATGAGAACACAGTGGACCTCAGCGTGGTCACAGgCAGTACTCCAGGTCCATGTCCATCAGCCCCAGCGGAACACGCGACTACACAGGACACTTGTAAAGgtggAGTGAGTGGGGTTGAGCGAGGGCTGATGTTCGGTGGTGTTGGTTTGGCTGGTCTGGTCTTTCTCCTGGCTACAGTCGCTGCAGGCAGAGCGATCGCCCATCGAGCCTGGCAGGCAGGAAGAGACTCGGTTCTACTCAGCTCAGATTAGAGAAGACATATTATTTGATCAGctgaaaaaaattctttcaaaagaaaactgtttttataCACTCTGattctgtattttatattcttcttcatatttgtattatatGAGACTGTAAATTGTTTAACTGCCTAATTATCTCTCCAGGAAAACTTGAACAAGGCGACAGAAAGCTCCTGTTCAAGGATCTGGAGTTACATCAGCAGAGACATTTTCCATTCAAACACATCAAATCACAAAGATTGTTCTGGACACTTTTTATGTACTGTGCTGTTTGTATCATTTATTATAGTACATATatattgtttgcatttattaatgtataaataaatgaatcctgtaaaaaaat
>XR_004578864.1
CGACGATAAAAGAAGCGGGGGGCAGATTGTAGTGGATAGATGTTGAGGTGCCTGTGTCTTTAAGCTACAGCAACGGTGTTGTGTCGCACCTGTATGACATCACTAGATGCGACTGATTTGTGACAATTGTTAGCCTCGGAGCTCCTTTAAAAGCACGGCGTTGGCGATGCTAAGgAGTTGGGGGACGCCGGCAGGGAGGCTTGGCACCGGGTGGCTGGgtacctgtgtttgtgtgtgtttcacctttCTGGCAGTGTAGTGTCACCTGGGTGTGctgtgcagtgtatgtgtgcgctTCACGTGTGGTCTTTTTGGACCCTCCTTCCAGATCGCCTCCCTGTGAATACTGTAAAGAGAAAAACGTCTGTACCCTTGATTGTGGCAAGCTGACCAAAGATAGAGTGACCTGGGGCAAGGTCATTAATGGAAGAAGGACGGACATTTTAACCAATCATTACGGAAATGTTACGAGACGCTCTAACAAATTCAGTCGCTACAGTTCAAAAGCGAATTCACTGAAGATATCCAAAGTAACGCACTCGGACGCTGGAAGATTTTACTGCAATGAGAACACAGTGGACCTCAGCGTGGTCACAGgCAGTACTCCAGGTCCATGTCCATCAGCCCCAGCGGAACACGCGACTACACAGGACACTTGTAAAGgtggAGTGAGTGGGGTTGAGCGAGGGCTGATGTTCGGTGGTGTTGGTTTGGCTGGTCTGGTCTTTCTCCTGGCTACAGTCGCTGCAGGCAGAGCGATCGCCCATCGAGCCTGGCAGGCAGGAAGAGACTCGGTTCTACTCAGCTCAGATTAGAGAAGACATATTATTTGATCAGctgaaaaaaattctttcaaaagaaaactgtttttataCACTCTGattctgtattttatattcttcttcatatttgtattatatGAGACTGTAAATTGTTTAACTGCCTAATTATCTCTCCAGGAAAACTTGAACAAGGCGACAGAAAGCTCCTGTTCAAGGATCTGGAGTTACATCAGCAGAGACATTTTCCATTCAAACACATCAAATCACAAAGATTGTTCTGGACACTTTTTATGTACTGTGCTGTTTGTATCATTTATTATAGTACATATatattgtttgcatttattaatgtataaataaatgaatcctg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU168783 False 1121 lncRNA 0.45 5 3204461 3215786
XR_004578864.1 True 1152 lncRNA 0.45 5 3211363 3215777

Neighbor

gene id symbol gene type direction distance location
slc39a7 slc39a7,LOC107395789 coding upstream 50615 3146038 ~ 3153846 (+)
rps18 rps18,LOC107726165,LOC107693766 coding upstream 80747 3118288 ~ 3123714 (+)
LOC113523850 NA coding upstream 143124 3055623 ~ 3061337 (+)
LOC117598055 NA coding upstream 306204 2893487 ~ 2898257 (+)
LOC117598059 LOC108274858,LOC108274862 coding upstream 448194 2753429 ~ 2756267 (+)
LOC117597933 LOC108279645 coding downstream 32738 3248524 ~ 3249755 (+)
cratb cratb,LOC108274804,LOC108435838,LOC107561339,LOC107563340,LOC107758403,LOC107679039,LOC105903715 coding downstream 78013 3293799 ~ 3308324 (+)
ppt2b ppt2,LOC103364422 coding downstream 130786 3346572 ~ 3356643 (+)
rps5 rps5,LOC105903695 coding downstream 146614 3362400 ~ 3368547 (+)
LOC113523857 NA coding downstream 148429 3364215 ~ 3364348 (+)
G142521 LOC108279645,LOC108274854 non-coding upstream 5130 3159446 ~ 3199331 (+)
LOC117598030 LOC108274854,LOC108279645 non-coding upstream 5137 3197876 ~ 3199324 (+)
LOC113523831 LOC108279645,LOC108274854 non-coding upstream 11093 3191940 ~ 3193368 (+)
LOC113523814 LOC108279645 non-coding upstream 19762 3183316 ~ 3184699 (+)
LOC113523815 NA non-coding upstream 27478 3174738 ~ 3176983 (+)
trnac-gca_1 NA non-coding downstream 191 3215977 ~ 3216048 (+)
trnac-gca_2 NA non-coding downstream 1632 3217418 ~ 3217489 (+)
trnac-gca_3 NA non-coding downstream 3363 3219149 ~ 3219220 (+)
G142524 NA non-coding downstream 13520 3229306 ~ 3230300 (+)
LOC113523833 LOC108279645 non-coding downstream 35599 3251385 ~ 3251999 (+)
LOC113523823 NA other upstream 171935 2431145 ~ 3032526 (+)
LOC117598067 NA other upstream 395824 2559811 ~ 2808637 (+)
LOC117598057 NA other upstream 511619 2687795 ~ 2692842 (+)
LOC117598105 NA other upstream 645734 2373223 ~ 2558727 (+)
LOC117598104 LOC108274858,LOC108274862,LOC108261310,LOC108274845 other upstream 726503 2475158 ~ 2477958 (+)
LOC113523845 NA other downstream 168394 3384180 ~ 3396067 (+)
G142576 NA other downstream 181884 3397670 ~ 3462171 (+)
fhl3b fhl3,LOC108438237,LOC107734040,LOC107551770,LOC107681628 other downstream 1269047 4484833 ~ 4509248 (+)
gpx3 gpx3 other downstream 2525121 5740907 ~ 5747944 (+)
LOC113547098 deptor,LOC108274614,LOC108442483,LOC107685573 other downstream 3371425 6587211 ~ 6593605 (+)

Expression


Co-expression Network