G142545


Basic Information

Item Value
gene id G142545
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 3283128 ~ 3352119 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU168808
TCAGgttgtttcatatttatttggATTCGTGAATATCTGATTTCCAGACTTTCTGTGGTGAAAAAAAGTAGAAACAATTAAAAGTGagtcagtgttttatttgtgtgtgctgagacagagacacattCTTCATTACGAATGATAAATCATGTATCTTACATGGATCACATTGGTGTTGGATCTACATGCGATACAGTGAGGGTGTAGGCTCTCCCTCCATCAGCGCCTTTACTCCAAATCACTTTACACTGATACTGTCCTCTGTAACGCTcctgagttactgctaccatcctggagttgattattttcctataacagcacatccctaagtgttttaatcctcttacaccacagcagtttgctgaTGATtaaaatttcttatttattaataaacaatatctcatacttttttatccgttAATAGTTACATATCAAAATGTAGAAACAATTAAAAGTGAGTCACAgtcttactttttttaaatttactatttgtgtgtgtgtgtgtgtgtgtGGACAGACAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU168808 True 522 lncRNA 0.35 2 3283128 3352119

Neighbor

gene id symbol gene type direction distance location
LOC117597933 LOC108279645 coding upstream 33373 3248524 ~ 3249755 (+)
slc39a7 slc39a7,LOC107395789 coding upstream 129282 3146038 ~ 3153846 (+)
rps18 rps18,LOC107726165,LOC107693766 coding upstream 159414 3118288 ~ 3123714 (+)
LOC113523850 NA coding upstream 221791 3055623 ~ 3061337 (+)
LOC117598055 NA coding upstream 384871 2893487 ~ 2898257 (+)
rps5 rps5,LOC105903695 coding downstream 10281 3362400 ~ 3368547 (+)
LOC113523857 NA coding downstream 12096 3364215 ~ 3364348 (+)
LOC113523859 NA coding downstream 14006 3366125 ~ 3366258 (+)
LOC113523858 NA coding downstream 16086 3368205 ~ 3368338 (+)
khdrbs3 khdrbs3,LOC107687064,LOC107727300,LOC107566726,LOC102789115 coding downstream 350377 3702496 ~ 3816623 (+)
trnac-gca_12 NA non-coding upstream 22183 3260874 ~ 3260945 (+)
trnac-gca_11 NA non-coding upstream 22716 3260341 ~ 3260412 (+)
trnac-gca_10 NA non-coding upstream 23249 3259808 ~ 3259879 (+)
trnac-gca_9 NA non-coding upstream 23867 3259190 ~ 3259261 (+)
trnac-gca_8 NA non-coding upstream 25613 3257444 ~ 3257515 (+)
G142573 NA non-coding downstream 27602 3379721 ~ 3381739 (+)
G142580 NA non-coding downstream 38786 3390905 ~ 3391147 (+)
G142575 NA non-coding downstream 63403 3415522 ~ 3435565 (+)
G142584 NA non-coding downstream 67433 3419552 ~ 3421435 (+)
G142908 NA non-coding downstream 265057 3617176 ~ 3624288 (+)
LOC113523823 NA other upstream 250602 2431145 ~ 3032526 (+)
LOC117598067 NA other upstream 474491 2559811 ~ 2808637 (+)
LOC117598057 NA other upstream 590286 2687795 ~ 2692842 (+)
LOC117598105 NA other upstream 724401 2373223 ~ 2558727 (+)
LOC117598104 LOC108274858,LOC108274862,LOC108261310,LOC108274845 other upstream 805170 2475158 ~ 2477958 (+)
LOC113523845 NA other downstream 32061 3384180 ~ 3396067 (+)
G142576 NA other downstream 45551 3397670 ~ 3462171 (+)
fhl3b fhl3,LOC108438237,LOC107734040,LOC107551770,LOC107681628 other downstream 1132714 4484833 ~ 4509248 (+)
gpx3 gpx3 other downstream 2388788 5740907 ~ 5747944 (+)
LOC113547098 deptor,LOC108274614,LOC108442483,LOC107685573 other downstream 3235092 6587211 ~ 6593605 (+)

Expression


Co-expression Network