G142553


Basic Information

Item Value
gene id G142553
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 3312761 ~ 3321168 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU168817
TAGATGTTGGTCTGCATGTGGGGGTTTGAGTTACTTACACACAGTTGTGTCTCTTCTCACTTTTAAAATGGCCGCTCTACCCCAGTCCATGCCCTTTGGGATTTGGGATTCTCCCTGCTTGTGGATGTCACGGCTGTTGTGAtctttttttgtgctttcttgCACTCATTTAATTTCAACATTATGcgaggaagaggagagaaacTAGACCCCAGCCAAGGCTGGCCTCTAGCTCTGGTACAGCCAACTATCATGGAGTTTCAGCTGTGTATTCCATACATGGAAGAAGAATTTGGAAAGAGGCTATGATGTTGCATAACACTTATAATGACTATAAGAGAAGAATCTGTCCTGTGGCTCCTTGGAGTGCATGTTCTGGAGCTGCAGACCCTGGCTGAC

Function

GO: NA

KEGG:

id description
ko04925 Aldosterone synthesis and secretion

RNA

RNA id representative length rna type GC content exon number start site end site
TU168817 True 399 lncRNA 0.46 2 3312761 3321168

Neighbor

gene id symbol gene type direction distance location
cratb cratb,LOC108274804,LOC108435838,LOC107561339,LOC107563340,LOC107758403,LOC107679039,LOC105903715 coding upstream 4437 3293799 ~ 3308324 (+)
LOC117597933 LOC108279645 coding upstream 63006 3248524 ~ 3249755 (+)
slc39a7 slc39a7,LOC107395789 coding upstream 158915 3146038 ~ 3153846 (+)
rps18 rps18,LOC107726165,LOC107693766 coding upstream 189047 3118288 ~ 3123714 (+)
LOC113523850 NA coding upstream 251424 3055623 ~ 3061337 (+)
ppt2b ppt2,LOC103364422 coding downstream 25404 3346572 ~ 3356643 (+)
rps5 rps5,LOC105903695 coding downstream 41232 3362400 ~ 3368547 (+)
LOC113523857 NA coding downstream 43047 3364215 ~ 3364348 (+)
LOC113523859 NA coding downstream 44957 3366125 ~ 3366258 (+)
LOC113523858 NA coding downstream 47037 3368205 ~ 3368338 (+)
trnac-gca_12 NA non-coding upstream 51816 3260874 ~ 3260945 (+)
trnac-gca_11 NA non-coding upstream 52349 3260341 ~ 3260412 (+)
trnac-gca_10 NA non-coding upstream 52882 3259808 ~ 3259879 (+)
trnac-gca_9 NA non-coding upstream 53500 3259190 ~ 3259261 (+)
trnac-gca_8 NA non-coding upstream 55246 3257444 ~ 3257515 (+)
G142573 NA non-coding downstream 58553 3379721 ~ 3381739 (+)
G142580 NA non-coding downstream 69737 3390905 ~ 3391147 (+)
G142575 NA non-coding downstream 94354 3415522 ~ 3435565 (+)
G142584 NA non-coding downstream 98384 3419552 ~ 3421435 (+)
G142908 NA non-coding downstream 296008 3617176 ~ 3624288 (+)
LOC113523823 NA other upstream 280235 2431145 ~ 3032526 (+)
LOC117598067 NA other upstream 504124 2559811 ~ 2808637 (+)
LOC117598057 NA other upstream 619919 2687795 ~ 2692842 (+)
LOC117598105 NA other upstream 754034 2373223 ~ 2558727 (+)
LOC117598104 LOC108274858,LOC108274862,LOC108261310,LOC108274845 other upstream 834803 2475158 ~ 2477958 (+)
LOC113523845 NA other downstream 63012 3384180 ~ 3396067 (+)
G142576 NA other downstream 76502 3397670 ~ 3462171 (+)
fhl3b fhl3,LOC108438237,LOC107734040,LOC107551770,LOC107681628 other downstream 1163665 4484833 ~ 4509248 (+)
gpx3 gpx3 other downstream 2419739 5740907 ~ 5747944 (+)
LOC113547098 deptor,LOC108274614,LOC108442483,LOC107685573 other downstream 3266043 6587211 ~ 6593605 (+)

Expression


Co-expression Network