G142908


Basic Information

Item Value
gene id G142908
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 3617176 ~ 3624288 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU169296
TTTATTTGTGAGCATGCTGATATTGCTGTTGGCCCTGCTCATAAGTTTTGGCACCTGGCTGTCGTAGCGCTCCATGAACCATTGATCCTCCTGCGGTTCCATCACGCAGCTCATGCACGCGCAAATCTTCGGTGGACTGACATCGAAAAAATCCTTCAAACCGAATCTGAAATCGACTCGGACGAACACAAGCAGGAAGACCATCCACATAGCAGCGTGAATGACACGAATCTTCAATTTCATCCTCCGGAGGCAACGCATcgttaatgataaaaaaaaaaaaaaaaaaaacatg
>TU169297
TTTATTTGTGAGCATGCTGATATTGCTGTTGGCCCTGCTCATAAGTTTTGGCACCTGGCTGTCGTAGCGCTCCATGAACCATTGATCCTCCTGCGGTTCCATCACGCAGCTCATGCACGCGCAAATCTTCGGTGGACTGACATCGAAAAAATCCTTCAAACCGAATCTGAAATCGACTCGGACGAACACAAGCAGGAAGACCATCCACATAGCAGCGTGAATGACACGAATCTTCAATTTCATCCTCCGGAGGCAACGCATcgttaatgataaaaaaaaaaaaaaaaaaaatcaa

Function

GO: NA

KEGG:

id description
ko05322 Systemic lupus erythematosus

RNA

RNA id representative length rna type GC content exon number start site end site
TU169296 True 295 lncRNA 0.45 2 3617176 3620662
TU169297 False 295 lncRNA 0.45 2 3617176 3624288

Neighbor

gene id symbol gene type direction distance location
rps5 rps5,LOC105903695 coding upstream 248629 3362400 ~ 3368547 (+)
LOC113523858 NA coding upstream 248838 3368205 ~ 3368338 (+)
LOC113523859 NA coding upstream 250918 3366125 ~ 3366258 (+)
LOC113523857 NA coding upstream 252828 3364215 ~ 3364348 (+)
ppt2b ppt2,LOC103364422 coding upstream 260533 3346572 ~ 3356643 (+)
khdrbs3 khdrbs3,LOC107687064,LOC107727300,LOC107566726,LOC102789115 coding downstream 78208 3702496 ~ 3816623 (+)
LOC113523835 LOC108274547,LOC107554574,LOC107669946,LOC107727308 coding downstream 385631 4009919 ~ 4046648 (+)
rragcb rragc,LOC108275365 coding downstream 843834 4468122 ~ 4479494 (+)
stpg1 stpg1 coding downstream 901327 4525615 ~ 4530986 (+)
map7d1b map7d1,LOC108274711,LOC108438234,LOC107734037,LOC107551771,LOC107669943 coding downstream 913208 4537496 ~ 4593588 (+)
G142575 NA non-coding upstream 181611 3415522 ~ 3435565 (+)
G142584 NA non-coding upstream 195741 3419552 ~ 3421435 (+)
G142580 NA non-coding upstream 226029 3390905 ~ 3391147 (+)
G142573 NA non-coding upstream 235437 3379721 ~ 3381739 (+)
G142545 NA non-coding upstream 265057 3283128 ~ 3352119 (+)
G142999 NA non-coding downstream 301771 3926059 ~ 3933020 (+)
G143048 NA non-coding downstream 444070 4068358 ~ 4069576 (+)
G143125 NA non-coding downstream 502302 4126590 ~ 4126795 (+)
G143185 NA non-coding downstream 630144 4254432 ~ 4254668 (+)
G143186 NA non-coding downstream 630436 4254724 ~ 4254951 (+)
G142576 NA other upstream 155005 3397670 ~ 3462171 (+)
LOC113523845 NA other upstream 221109 3384180 ~ 3396067 (+)
LOC113523823 NA other upstream 584650 2431145 ~ 3032526 (+)
fhl3b fhl3,LOC108438237,LOC107734040,LOC107551770,LOC107681628 other downstream 860545 4484833 ~ 4509248 (+)
gpx3 gpx3 other downstream 2116619 5740907 ~ 5747944 (+)
LOC113547098 deptor,LOC108274614,LOC108442483,LOC107685573 other downstream 2962923 6587211 ~ 6593605 (+)
G144353 NA other downstream 3155701 6779989 ~ 6919661 (+)
LOC113547145 NA other downstream 3159228 6783516 ~ 6785437 (+)

Expression


Co-expression Network