G143048


Basic Information

Item Value
gene id G143048
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 4068358 ~ 4069576 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU169457
TATTGACATCGCAAAGAATATATCATTACACAATATATCAGGAACACGTCTTATTGAATACATATCAAAGAAAAAAGGGCACACTGCGATGACTTCACACACATGATCAAGGGCACATCTTGATGACATCACCTGGATGTTGACAGGCACATCTTGGgtgtgtctcaatcagctccctagctCCCTAAGTAGTGAATCAGTATATCATGTACATGAGTTTGGGCGGTGGATCCTGGATCCTGGCTCACTGATGTCACTTTGGGACACTGGTGACTCAATATCCAGTGACATGACTGTGTATTCGCATTTTAAAACATCACCACAGGCGTATATCACCAACAGGCAGGACCAATATTtctgatatattatatatttctgatattatataaatttatatcgTATAAATTTGTTAGCGTAATCACATGCGTTTCTGACACGCTGCTAGAATATCATGATGACATCACAAATCAGACCAAAGGCAGATGACAGTGACATCACAAGTAAGATGACGAGTGCATCCTGATGACATCACAAATGACATAAAGAGCATTTCTCAAAGAAAACACATGAATGAAGAAGAGAATATACTGATGACATCACACAGATAAGATAAAGGGCAGACTGCACAGACATCACAATCAAGCTCAAGGGAATATTTCAGTGACATCACATGGAAAATAAATAGGCATTCCTTGATGACATCACACGAGATCAAAAATACATCTCAGTGGCATCATGTGGAAGATGAATAGGCACATCTTGATGACATCACACGTAAGATCAAGGGCACATCTTGATGACAACACACATGAAAATACCAATATTGCACTCACCCTGAAGCTATCACACAGAAGATCACAGAAGGCCACTTTTGATGATGTCACATTTAAGATACAGGACACATTTTGATGACATTATGCAAAAGTAAAGCTATTACTCAAACTCACCGGTTCTCCGTTAGTGCCTGGATCTCCTTTGGACCCAGCGTCTCCTTTAGCTCCCTGTCCAAACAGAAGTGTGAGACATTTTCCAGCAGAGACATTGTGTTCATTGTGACTGAAGGTGTACGTTTAATGCTGTAATTATAATCAGCAGTTACACAAACAGATGCAGCTCTTTGCATACATCAGCACCATAACAGCACAGAAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU169457 True 1150 lncRNA 0.40 2 4068358 4069576

Neighbor

gene id symbol gene type direction distance location
LOC113523835 LOC108274547,LOC107554574,LOC107669946,LOC107727308 coding upstream 21710 4009919 ~ 4046648 (+)
khdrbs3 khdrbs3,LOC107687064,LOC107727300,LOC107566726,LOC102789115 coding upstream 251735 3702496 ~ 3816623 (+)
rps5 rps5,LOC105903695 coding upstream 699811 3362400 ~ 3368547 (+)
rragcb rragc,LOC108275365 coding downstream 398546 4468122 ~ 4479494 (+)
stpg1 stpg1 coding downstream 456039 4525615 ~ 4530986 (+)
map7d1b map7d1,LOC108274711,LOC108438234,LOC107734037,LOC107551771,LOC107669943 coding downstream 467920 4537496 ~ 4593588 (+)
thrap3b LOC108274713,LOC107734038,LOC107551756 coding downstream 536745 4606321 ~ 4631426 (+)
si:dkey-206d17.12 LOC108275399 coding downstream 601474 4671050 ~ 4690613 (+)
G142999 NA non-coding upstream 135338 3926059 ~ 3933020 (+)
G142908 NA non-coding upstream 444070 3617176 ~ 3624288 (+)
G142575 NA non-coding upstream 632793 3415522 ~ 3435565 (+)
G142584 NA non-coding upstream 646923 3419552 ~ 3421435 (+)
G142580 NA non-coding upstream 677211 3390905 ~ 3391147 (+)
G143125 NA non-coding downstream 57014 4126590 ~ 4126795 (+)
G143185 NA non-coding downstream 184856 4254432 ~ 4254668 (+)
G143186 NA non-coding downstream 185148 4254724 ~ 4254951 (+)
G143312 NA non-coding downstream 421521 4491097 ~ 4543484 (+)
G143315 NA non-coding downstream 452298 4521874 ~ 4522693 (+)
G142576 NA other upstream 606187 3397670 ~ 3462171 (+)
LOC113523845 NA other upstream 672291 3384180 ~ 3396067 (+)
LOC117598067 NA other upstream 1259721 2559811 ~ 2808637 (+)
LOC117598057 NA other upstream 1375516 2687795 ~ 2692842 (+)
LOC117598104 LOC108274858,LOC108274862,LOC108261310,LOC108274845 other upstream 1590400 2475158 ~ 2477958 (+)
fhl3b fhl3,LOC108438237,LOC107734040,LOC107551770,LOC107681628 other downstream 415257 4484833 ~ 4509248 (+)
gpx3 gpx3 other downstream 1671331 5740907 ~ 5747944 (+)
LOC113547098 deptor,LOC108274614,LOC108442483,LOC107685573 other downstream 2517635 6587211 ~ 6593605 (+)
G144353 NA other downstream 2710413 6779989 ~ 6919661 (+)
LOC113547145 NA other downstream 2713940 6783516 ~ 6785437 (+)

Expression


Co-expression Network