G143186


Basic Information

Item Value
gene id G143186
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 4254724 ~ 4254951 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU169601
ATCGCTTCTGCCAACTGGTTTAAACCTCAATGACATCACAAGGCCTGTTCTGGTCACATGACAGCCACTGGAGAATGGAAGTGTGAACCAGTGTGAAAGCTCTGGGAGGAAAGATGATGCGAAAGAGCTGTAAATAGAGGATAAAAAGTGCTGCCAAAGCTCATGCTGTTGTCAAAAACCCAGACTAGCATTAACAATGTTCTAGTAGAGGAAGATTGTGGGGCATCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU169601 True 228 lncRNA 0.45 1 4254724 4254951

Neighbor

gene id symbol gene type direction distance location
LOC113523835 LOC108274547,LOC107554574,LOC107669946,LOC107727308 coding upstream 208076 4009919 ~ 4046648 (+)
khdrbs3 khdrbs3,LOC107687064,LOC107727300,LOC107566726,LOC102789115 coding upstream 438101 3702496 ~ 3816623 (+)
LOC113523858 NA coding upstream 886386 3368205 ~ 3368338 (+)
LOC113523859 NA coding upstream 888466 3366125 ~ 3366258 (+)
LOC113523857 NA coding upstream 890376 3364215 ~ 3364348 (+)
rragcb rragc,LOC108275365 coding downstream 213171 4468122 ~ 4479494 (+)
stpg1 stpg1 coding downstream 270664 4525615 ~ 4530986 (+)
map7d1b map7d1,LOC108274711,LOC108438234,LOC107734037,LOC107551771,LOC107669943 coding downstream 282545 4537496 ~ 4593588 (+)
thrap3b LOC108274713,LOC107734038,LOC107551756 coding downstream 351370 4606321 ~ 4631426 (+)
si:dkey-206d17.12 LOC108275399 coding downstream 416099 4671050 ~ 4690613 (+)
G143185 NA non-coding upstream 56 4254432 ~ 4254668 (+)
G143125 NA non-coding upstream 127929 4126590 ~ 4126795 (+)
G143048 NA non-coding upstream 185148 4068358 ~ 4069576 (+)
G142999 NA non-coding upstream 321704 3926059 ~ 3933020 (+)
G142908 NA non-coding upstream 630436 3617176 ~ 3624288 (+)
G143312 NA non-coding downstream 236146 4491097 ~ 4543484 (+)
G143315 NA non-coding downstream 266923 4521874 ~ 4522693 (+)
G143316 NA non-coding downstream 268311 4523262 ~ 4571638 (+)
G143317 NA non-coding downstream 269047 4523998 ~ 4559387 (+)
G143322 NA non-coding downstream 302355 4557306 ~ 4558418 (+)
G142576 NA other upstream 792553 3397670 ~ 3462171 (+)
LOC113523845 NA other upstream 858657 3384180 ~ 3396067 (+)
LOC117598067 NA other upstream 1446087 2559811 ~ 2808637 (+)
LOC117598057 NA other upstream 1561882 2687795 ~ 2692842 (+)
LOC117598104 LOC108274858,LOC108274862,LOC108261310,LOC108274845 other upstream 1776766 2475158 ~ 2477958 (+)
fhl3b fhl3,LOC108438237,LOC107734040,LOC107551770,LOC107681628 other downstream 229882 4484833 ~ 4509248 (+)
gpx3 gpx3 other downstream 1485956 5740907 ~ 5747944 (+)
LOC113547098 deptor,LOC108274614,LOC108442483,LOC107685573 other downstream 2332260 6587211 ~ 6593605 (+)
G144353 NA other downstream 2525038 6779989 ~ 6919661 (+)
LOC113547145 NA other downstream 2528565 6783516 ~ 6785437 (+)

Expression


Co-expression Network