G143269


Basic Information

Item Value
gene id G143269
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 4615242 ~ 4622151 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU169689
CTTAGACTTAATAGATTTATTAAACTTCTTTTATGGGATTTTCTAAATCCATGATAATAATCATTGGTCTTGAATAACTGTATCGTTGTTCACGGTAAAGACTAGCTAACTGAGGCTGGTGTGATATAACGATATTATCATGGATTTGAGCTATCGCGATGGCTTATCAGCTTTAGGAGCGACAAAAATAAAGTGCTGTATTTCATaatgtgtttccttttctcCTATTTTGTATCCAATACAAATCttaataacctgctgtctgaATTCAGTACTTTCTCTGTATCTTAGTTCCCCTTATCCGTGCTGCCAGACAGATAAAGTCGTGAacgtcttttttttatttcaatttcataATGAGTTTAGTTACCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU169689 True 372 lncRNA 0.34 2 4615242 4622151

Neighbor

gene id symbol gene type direction distance location
map7d1b map7d1,LOC108274711,LOC108438234,LOC107734037,LOC107551771,LOC107669943 coding upstream 21654 4537496 ~ 4593588 (+)
stpg1 stpg1 coding upstream 84256 4525615 ~ 4530986 (+)
rragcb rragc,LOC108275365 coding upstream 135748 4468122 ~ 4479494 (+)
LOC113523835 LOC108274547,LOC107554574,LOC107669946,LOC107727308 coding upstream 568594 4009919 ~ 4046648 (+)
khdrbs3 khdrbs3,LOC107687064,LOC107727300,LOC107566726,LOC102789115 coding upstream 798619 3702496 ~ 3816623 (+)
si:dkey-206d17.12 LOC108275399 coding downstream 48899 4671050 ~ 4690613 (+)
LOC117597937 lrrtm2,LOC108274667,LOC107750357,LOC107680618 coding downstream 280749 4902900 ~ 4905863 (+)
LOC113547138 lrrtm2,LOC107680618,LOC107750357 coding downstream 792766 5414917 ~ 5420160 (+)
LOC113547141 mchr2,LOC108274669,LOC108436838 coding downstream 943170 5565321 ~ 5582749 (+)
LOC113547120 LOC108275395,LOC108439812,LOC105903016 coding downstream 1216475 5838626 ~ 5850058 (+)
G143325 NA non-coding upstream 31282 4583198 ~ 4583960 (+)
G143316 NA non-coding upstream 43604 4523262 ~ 4571638 (+)
G143268 NA non-coding upstream 44533 4568198 ~ 4570709 (+)
G143317 NA non-coding upstream 55855 4523998 ~ 4559387 (+)
G143322 NA non-coding upstream 56824 4557306 ~ 4558418 (+)
G143440 NA non-coding downstream 72233 4694384 ~ 4694861 (+)
G143448 NA non-coding downstream 81411 4703562 ~ 4703783 (+)
G143450 NA non-coding downstream 84756 4706907 ~ 4707152 (+)
G143451 NA non-coding downstream 91049 4713200 ~ 4714103 (+)
G143494 NA non-coding downstream 287169 4909320 ~ 4909523 (+)
fhl3b fhl3,LOC108438237,LOC107734040,LOC107551770,LOC107681628 other upstream 105994 4484833 ~ 4509248 (+)
G142576 NA other upstream 1153071 3397670 ~ 3462171 (+)
LOC113523845 NA other upstream 1219175 3384180 ~ 3396067 (+)
LOC117598067 NA other upstream 1806605 2559811 ~ 2808637 (+)
gpx3 gpx3 other downstream 1118756 5740907 ~ 5747944 (+)
LOC113547098 deptor,LOC108274614,LOC108442483,LOC107685573 other downstream 1965060 6587211 ~ 6593605 (+)
G144353 NA other downstream 2157838 6779989 ~ 6919661 (+)
LOC113547145 NA other downstream 2161365 6783516 ~ 6785437 (+)
LOC117598156 NA other downstream 2174821 6796972 ~ 6798904 (+)

Expression


Co-expression Network