G143315


Basic Information

Item Value
gene id G143315
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 4521874 ~ 4522693 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU169739
CCAGGGGTTTGTGAGactttgatggaaatgaaagtttaaaatgaaattcattAAAAGCATTAATACTGAAGCACGTTACTGTAACCTCGTAAGTATAAAATGATAGAAGTtgactgactcactcattagTCACGTCATGAGAGAGTAGTTCTCAGCATGTCAGAGTTTAACGTGAATTACGACGTTAGCTAGCTGAATCATTCTTCATAGCTAAAAGCGTTTTCATCTTTTAAAAGGGTTTAAGATCATTTAAAATGGACGGACACGTTATCAGCAAAAGTGCAACAAACAGACAACAAAATCTCCAAAGAGGGAAAAGTTCTGTGAGTGAGGAATAGTTCATATTTGGGTTCAGGTGCAGGAACAGAATAcgcctgttttaatcggaaatgtgttgcatgtaaaaaccttattcagaaaatccactgaaaggagatatatgcacgTGCTCAgcccgcaaggaattgtgggagctaacagatgcttagctgtaggctaggtgtTTAGGAATAGCGACTCGGGAATACTGCGGACATCCAAACCGTGTacacaggaatattccgatgcctgtacgcatataaacatcgtattcggaatacgGCTGCAACCCGgatgtgcgtGTAACCGCGGTCAGTGCTGGTGAGAAGAGAGGGATACTGACGGCCACTGATGTGACGGAGGATTTACTGAACAGCCGCTCTGCCTCCTTGAACTTTCGGTTCCTTCTGTCCGTCTTACTGTTGGAGTttctattgaagaaaaaaataaacaaaaacaaacaaacacaagaaaatTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU169739 True 796 lncRNA 0.41 2 4521874 4522693

Neighbor

gene id symbol gene type direction distance location
rragcb rragc,LOC108275365 coding upstream 42380 4468122 ~ 4479494 (+)
LOC113523835 LOC108274547,LOC107554574,LOC107669946,LOC107727308 coding upstream 475226 4009919 ~ 4046648 (+)
khdrbs3 khdrbs3,LOC107687064,LOC107727300,LOC107566726,LOC102789115 coding upstream 705251 3702496 ~ 3816623 (+)
LOC113523858 NA coding upstream 1153536 3368205 ~ 3368338 (+)
LOC113523859 NA coding upstream 1155616 3366125 ~ 3366258 (+)
stpg1 stpg1 coding downstream 2922 4525615 ~ 4530986 (+)
map7d1b map7d1,LOC108274711,LOC108438234,LOC107734037,LOC107551771,LOC107669943 coding downstream 14803 4537496 ~ 4593588 (+)
thrap3b LOC108274713,LOC107734038,LOC107551756 coding downstream 83628 4606321 ~ 4631426 (+)
si:dkey-206d17.12 LOC108275399 coding downstream 148357 4671050 ~ 4690613 (+)
LOC117597937 lrrtm2,LOC108274667,LOC107750357,LOC107680618 coding downstream 380207 4902900 ~ 4905863 (+)
G143186 NA non-coding upstream 266923 4254724 ~ 4254951 (+)
G143185 NA non-coding upstream 267206 4254432 ~ 4254668 (+)
G143125 NA non-coding upstream 395079 4126590 ~ 4126795 (+)
G143048 NA non-coding upstream 452298 4068358 ~ 4069576 (+)
G142999 NA non-coding upstream 588854 3926059 ~ 3933020 (+)
G143316 NA non-coding downstream 569 4523262 ~ 4571638 (+)
G143317 NA non-coding downstream 1305 4523998 ~ 4559387 (+)
G143322 NA non-coding downstream 34613 4557306 ~ 4558418 (+)
G143268 NA non-coding downstream 45505 4568198 ~ 4570709 (+)
G143325 NA non-coding downstream 60505 4583198 ~ 4583960 (+)
fhl3b fhl3,LOC108438237,LOC107734040,LOC107551770,LOC107681628 other upstream 12626 4484833 ~ 4509248 (+)
G142576 NA other upstream 1059703 3397670 ~ 3462171 (+)
LOC113523845 NA other upstream 1125807 3384180 ~ 3396067 (+)
LOC117598067 NA other upstream 1713237 2559811 ~ 2808637 (+)
LOC117598057 NA other upstream 1829032 2687795 ~ 2692842 (+)
gpx3 gpx3 other downstream 1218214 5740907 ~ 5747944 (+)
LOC113547098 deptor,LOC108274614,LOC108442483,LOC107685573 other downstream 2064518 6587211 ~ 6593605 (+)
G144353 NA other downstream 2257296 6779989 ~ 6919661 (+)
LOC113547145 NA other downstream 2260823 6783516 ~ 6785437 (+)
LOC117598156 NA other downstream 2274279 6796972 ~ 6798904 (+)

Expression


Co-expression Network