G143316


Basic Information

Item Value
gene id G143316
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 4523262 ~ 4571638 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU169740
tatgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgtcatggtTAGGGCACTGGAAAACAGGAAATACCGTTATGGCAGATCAAATGTTTTTCTCCTTTAAGGAGAATGTAAGCAGCTGCTGCACAGCATGCTGGGAAATGTAAATAAGGAACCCTGATcgctttttaatcattatttgaTCAGCAAGTGAAATGAGGTCCGTGGTGTGCCGTGAGACAGCCGTGAGGCAGAAACGCAAGGTTTTATTGCTCTCATTTGCAGTTGTCTCAGTCGGGGGTGCGCTGAGCTCAAAGCGCTTGGTGTGATTATGATCCCGGACGACGCAGTTAGTAAAATCTGGCcagattaaaaatgattatcAGACAGTAATGAACCATCAAACCATAAATCTATACACTTagacagaaagagtgaatgCATTTCAACTCTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU169740 True 445 lncRNA 0.43 2 4523262 4571638

Neighbor

gene id symbol gene type direction distance location
rragcb rragc,LOC108275365 coding upstream 43768 4468122 ~ 4479494 (+)
LOC113523835 LOC108274547,LOC107554574,LOC107669946,LOC107727308 coding upstream 476614 4009919 ~ 4046648 (+)
khdrbs3 khdrbs3,LOC107687064,LOC107727300,LOC107566726,LOC102789115 coding upstream 706639 3702496 ~ 3816623 (+)
LOC113523858 NA coding upstream 1154924 3368205 ~ 3368338 (+)
LOC113523859 NA coding upstream 1157004 3366125 ~ 3366258 (+)
thrap3b LOC108274713,LOC107734038,LOC107551756 coding downstream 34683 4606321 ~ 4631426 (+)
si:dkey-206d17.12 LOC108275399 coding downstream 99412 4671050 ~ 4690613 (+)
LOC117597937 lrrtm2,LOC108274667,LOC107750357,LOC107680618 coding downstream 331262 4902900 ~ 4905863 (+)
LOC113547138 lrrtm2,LOC107680618,LOC107750357 coding downstream 843279 5414917 ~ 5420160 (+)
LOC113547141 mchr2,LOC108274669,LOC108436838 coding downstream 993683 5565321 ~ 5582749 (+)
G143315 NA non-coding upstream 569 4521874 ~ 4522693 (+)
G143186 NA non-coding upstream 268311 4254724 ~ 4254951 (+)
G143185 NA non-coding upstream 268594 4254432 ~ 4254668 (+)
G143125 NA non-coding upstream 396467 4126590 ~ 4126795 (+)
G143048 NA non-coding upstream 453686 4068358 ~ 4069576 (+)
G143325 NA non-coding downstream 11560 4583198 ~ 4583960 (+)
G143269 NA non-coding downstream 43604 4615242 ~ 4622151 (+)
G143440 NA non-coding downstream 122746 4694384 ~ 4694861 (+)
G143448 NA non-coding downstream 131924 4703562 ~ 4703783 (+)
G143450 NA non-coding downstream 135269 4706907 ~ 4707152 (+)
fhl3b fhl3,LOC108438237,LOC107734040,LOC107551770,LOC107681628 other upstream 14014 4484833 ~ 4509248 (+)
G142576 NA other upstream 1061091 3397670 ~ 3462171 (+)
LOC113523845 NA other upstream 1127195 3384180 ~ 3396067 (+)
LOC117598067 NA other upstream 1714625 2559811 ~ 2808637 (+)
gpx3 gpx3 other downstream 1169269 5740907 ~ 5747944 (+)
LOC113547098 deptor,LOC108274614,LOC108442483,LOC107685573 other downstream 2015573 6587211 ~ 6593605 (+)
G144353 NA other downstream 2208351 6779989 ~ 6919661 (+)
LOC113547145 NA other downstream 2211878 6783516 ~ 6785437 (+)
LOC117598156 NA other downstream 2225334 6796972 ~ 6798904 (+)

Expression


Co-expression Network