G143451


Basic Information

Item Value
gene id G143451
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 4713200 ~ 4714103 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU169895
TCCCTGTTTCAACAGTGCGCAATGTTAAGAAGTTTGCCAAGCATGGAACTGTCAAGAACCTCCCTGGACATAGGGGAAAGAAGAAAATTGATGAGAGAACTCTTCAAAGGTTGGTGCGAATGGTGGAAAGAACACCACGTCTAACATCCAAAGACCTGAAGGCCAACCTGGAACAGTCTGGGGTCATGGTTTCAACAAGTACTATACGCCGTACACTAAACCAAGCAGGGCTTCATGGCGAAGGCCAAGGAAGACCCCATTGCTGAAGAAAAGACATAAAAAGGAACGACTGATCTTTGCCAAAGAGTACCTGGACAAACCACAATCGTTCTGGGAAAATGTTCTGtggacagatgaaacaaaaatagagcTTTTTGGCAGTGCACACCAACAGTTTGTTTACAGACGGCGCAATGAAACTTATAAGGAAAAGAACACCCTACCAACAGTTAAGCATGGTGGAGGATCCATAATGCTGTTGGGCTGCTTTGCTGCGTCTGGTACTGGAGGCTTTGACTGTATCACAGGAATCATGAAATCAGAGAATTACCAAGAGATTTTAGAGTGAAATGTCCTACCTAGTGTAAGAAAACTTGGTTTGAGTCAAAGATCATGGGACCTCCAGCAAGACAaagacccaaagcacacatccaAAAGCACGCAGGAATggttgaaaaggaaaaaatggacTGTTTTAAAATGGCCAGCAATGAGTCCTGATCTCAGTCCCATTGAAAATCTTTGGGGCAAGCTGCCATTGGGGAAAAGAACCCTGCAAACATTCAAGAGCTTGAACAAACTGCAAAGGAAGAGTGGGAGAAAATAACAGCAGAGAAATGCAAGAAGCTTATAGATGACTACAAGAAATGTTTGGAGGCTGTCATTGCTGCGAAAGGGTGTGCAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU169895 True 904 lncRNA 0.44 1 4713200 4714103

Neighbor

gene id symbol gene type direction distance location
si:dkey-206d17.12 LOC108275399 coding upstream 22587 4671050 ~ 4690613 (+)
thrap3b LOC108274713,LOC107734038,LOC107551756 coding upstream 81774 4606321 ~ 4631426 (+)
map7d1b map7d1,LOC108274711,LOC108438234,LOC107734037,LOC107551771,LOC107669943 coding upstream 119612 4537496 ~ 4593588 (+)
stpg1 stpg1 coding upstream 182214 4525615 ~ 4530986 (+)
rragcb rragc,LOC108275365 coding upstream 233706 4468122 ~ 4479494 (+)
LOC117597937 lrrtm2,LOC108274667,LOC107750357,LOC107680618 coding downstream 188797 4902900 ~ 4905863 (+)
LOC113547138 lrrtm2,LOC107680618,LOC107750357 coding downstream 700814 5414917 ~ 5420160 (+)
LOC113547141 mchr2,LOC108274669,LOC108436838 coding downstream 851218 5565321 ~ 5582749 (+)
LOC113547120 LOC108275395,LOC108439812,LOC105903016 coding downstream 1124523 5838626 ~ 5850058 (+)
LOC113547110 LOC108275396,LOC108439811,LOC105903007 coding downstream 1140127 5854230 ~ 5861207 (+)
G143450 NA non-coding upstream 6048 4706907 ~ 4707152 (+)
G143448 NA non-coding upstream 9417 4703562 ~ 4703783 (+)
G143440 NA non-coding upstream 18339 4694384 ~ 4694861 (+)
G143269 NA non-coding upstream 91049 4615242 ~ 4622151 (+)
G143325 NA non-coding upstream 129240 4583198 ~ 4583960 (+)
G143494 NA non-coding downstream 195217 4909320 ~ 4909523 (+)
G143510 NA non-coding downstream 396606 5110709 ~ 5111040 (+)
LOC117598093 NA non-coding downstream 477958 5192061 ~ 5194949 (+)
G143529 NA non-coding downstream 644536 5358639 ~ 5375744 (+)
G143532 ctnna1,LOC107594905,LOC107680619 non-coding downstream 648158 5362261 ~ 5377117 (+)
fhl3b fhl3,LOC108438237,LOC107734040,LOC107551770,LOC107681628 other upstream 203952 4484833 ~ 4509248 (+)
G142576 NA other upstream 1251029 3397670 ~ 3462171 (+)
LOC113523845 NA other upstream 1317133 3384180 ~ 3396067 (+)
LOC117598067 NA other upstream 1904563 2559811 ~ 2808637 (+)
gpx3 gpx3 other downstream 1026804 5740907 ~ 5747944 (+)
LOC113547098 deptor,LOC108274614,LOC108442483,LOC107685573 other downstream 1873108 6587211 ~ 6593605 (+)
G144353 NA other downstream 2065886 6779989 ~ 6919661 (+)
LOC113547145 NA other downstream 2069413 6783516 ~ 6785437 (+)
LOC117598156 NA other downstream 2082869 6796972 ~ 6798904 (+)

Expression


Co-expression Network