G143494


Basic Information

Item Value
gene id G143494
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 4909320 ~ 4909523 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU169942
CATGTTTTTGGTACTCATCAACCGATACCGATACTGAAGCCTCAAGCCAGCTAGCAGATTACCAGAACATTTTTTGAACATTACCAGTATTTCCATAATGTTATTTTTGGTCTGCTTGGGAACGTTGCTTGAGCTACAGTGTATTAACACTGAGTTTATAGAACATTGCGGGAATGTTATTTCTGGAATGTTACAGTCTTATTA

Function

GO: NA

KEGG:

id description
ko04724 Glutamatergic synapse
ko05014 Amyotrophic lateral sclerosis
ko05033 Nicotine addiction

RNA

RNA id representative length rna type GC content exon number start site end site
TU169942 True 204 lncRNA 0.37 1 4909320 4909523

Neighbor

gene id symbol gene type direction distance location
LOC117597937 lrrtm2,LOC108274667,LOC107750357,LOC107680618 coding upstream 3457 4902900 ~ 4905863 (+)
si:dkey-206d17.12 LOC108275399 coding upstream 218707 4671050 ~ 4690613 (+)
thrap3b LOC108274713,LOC107734038,LOC107551756 coding upstream 277894 4606321 ~ 4631426 (+)
map7d1b map7d1,LOC108274711,LOC108438234,LOC107734037,LOC107551771,LOC107669943 coding upstream 315732 4537496 ~ 4593588 (+)
stpg1 stpg1 coding upstream 378334 4525615 ~ 4530986 (+)
LOC113547138 lrrtm2,LOC107680618,LOC107750357 coding downstream 505394 5414917 ~ 5420160 (+)
LOC113547141 mchr2,LOC108274669,LOC108436838 coding downstream 655798 5565321 ~ 5582749 (+)
LOC113547120 LOC108275395,LOC108439812,LOC105903016 coding downstream 929103 5838626 ~ 5850058 (+)
LOC113547110 LOC108275396,LOC108439811,LOC105903007 coding downstream 944707 5854230 ~ 5861207 (+)
n4bp3 LOC108274652 coding downstream 955934 5865457 ~ 5903463 (+)
G143451 NA non-coding upstream 195217 4713200 ~ 4714103 (+)
G143450 NA non-coding upstream 202168 4706907 ~ 4707152 (+)
G143448 NA non-coding upstream 205537 4703562 ~ 4703783 (+)
G143440 NA non-coding upstream 214459 4694384 ~ 4694861 (+)
G143269 NA non-coding upstream 287169 4615242 ~ 4622151 (+)
G143510 NA non-coding downstream 201186 5110709 ~ 5111040 (+)
LOC117598093 NA non-coding downstream 282538 5192061 ~ 5194949 (+)
G143529 NA non-coding downstream 449116 5358639 ~ 5375744 (+)
G143532 ctnna1,LOC107594905,LOC107680619 non-coding downstream 452738 5362261 ~ 5377117 (+)
G143559 NA non-coding downstream 515894 5425417 ~ 5426525 (+)
fhl3b fhl3,LOC108438237,LOC107734040,LOC107551770,LOC107681628 other upstream 400072 4484833 ~ 4509248 (+)
G142576 NA other upstream 1447149 3397670 ~ 3462171 (+)
LOC113523845 NA other upstream 1513253 3384180 ~ 3396067 (+)
LOC117598067 NA other upstream 2100683 2559811 ~ 2808637 (+)
gpx3 gpx3 other downstream 831384 5740907 ~ 5747944 (+)
LOC113547098 deptor,LOC108274614,LOC108442483,LOC107685573 other downstream 1677688 6587211 ~ 6593605 (+)
G144353 NA other downstream 1870466 6779989 ~ 6919661 (+)
LOC113547145 NA other downstream 1873993 6783516 ~ 6785437 (+)
LOC117598156 NA other downstream 1887449 6796972 ~ 6798904 (+)

Expression


Co-expression Network