LOC117598093


Basic Information

Item Value
gene id LOC117598093
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 5192061 ~ 5194949 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU169966
gccttgtttttgtttctcttagctttgtgtgtttctgtttttgaccCTGCTCATAGTTTCAATTTTGATTTATGAATTATCCTTGTGTGAAGTTACCTGCCTGTGTTCTCACCTCTGTAGAGATTATGTATAGAGACTATGACACTTTCACTCAACACACTTTGTGTTCAGTGATTTTACACTTTTGTGGcttcttggtaacataacaagctatGTTTTTGTTCTGTAGTTTTATTAActtgatgatataaaataaaaacagaaggacaactgtttatagctgctataagTTTGGACCAAGTTCCTGTGTGTATATAAAGGGCAAATATaacacagaagaagaagaagaagcacatCAGGAGTCATCAGCAGGAGCACCAGACTGCTTACAGCAGtgttctacatttttttttcttgtccaaCATCTTTGCTGCAGCGGCAGTCAAAGCTTCCTGTCAGATTGCAGTTTCTTTTTACACATTGTTTTCACACTGTAAAATG
>XR_004578816.1
tttttgtttctcttagctttgtgtgtttctgtttttgaccCTGCTCATAGTTTCAATTTTGATTTATGAATTATCCTTGTGTGAAGTTACCTGCCTGTGTTCTCACCTCTGTAGAGATTATGTATAGAGACTATGACACTTTCACTCAACACACTTTGTGTTCAGTGATTTTACACTTTTGTGGcttcttggtaacataacaagctatGTTTTTGTTCTGTAGTTTTATTAActtgatgatataaaataaaaacagaaggacaactgtttatagctgctataagTTTGGACCAAGTTCCTGTGTGTATATAAAGGGCAAATATaacacagaagaagaagaagaagcacatCAGGAGTCATCAGCAGGAGCACCAGACTGCTTACAGCAGtgttctacatttttttttcttgtccaaCATCTTTGCTGCAGCGGCAGTCAAAGCTTCCTGTCAGATTGCAGTTTCTTTTTACACATTGTTTTCACACTGTAAAATGAGCGttactttttttcagtgttaacaTTTTGTCTTGTCAACACTGGAATCGGCACTGGACTCCATTTCTCCCAATGCACTACTGCCTACAAACATGGACATTACGGAGTACAACACCCATGCACCGCGTTCATTGTCACATTCAGTCACTCAATTTCTGATAACACACTTGGGCCCAATCCCATTTCTACCCCTTAGCCCTTCCCCTTTCCCCTACCCTCCGTTTCGCGTGTTCATATGAAGGGGTAGGTGTCTTGATTCTCTTTTGGTTGGAGGGGTAGAGGTAAGGGGAAAGGCCAGACAGCCCTTCAAACGAAGATTTTTCGGGACCACACTTCAAATGAAGGGGTATGAATTCTCAATGTGTGAACAAAAAGACCCACAAATGTAAGCATTATTGACgttaataaagattttaatgaatataaatcatttgttttgttaCATTCAATCGTGTGTTCATATTTATGGTGATGTTATTTtcataaacatattttcatGTCTGATGGCTGTAACCACAGAAGACATTTAGAAATCGATATTTAGAAATCGCTAAACTTTTTTCTCAAATATTGCCAAttcgagagagagaattagGACCTAGATGACGTATGATGACGTGTAACAGTATAGTAGTGGTGTCCCGATTCTTAGGGGAATATTTTCACCCCTACCCCTTGACACTCTGTTTCAAGGGACAAGGGGAATGGGGTAGGCATAGGGGTAGGGGTAGGTGAAGGGGTATAAAATAGAATTGGGATTGGGCCTTGGACTCTATtaccacacacactgtttaagcACATTCACTGCAACAACCCATTGCCAAGGTTTTgttcagttcctgttctcacctgaCATACTAAGCCTTTGTTTGATGGTTACTAATTCTGGTTTGAACCCTTGTTTTTGCCTTTGacttttgtcttgttctttgaTATCAATTTGTACAGCAGCTGATGATCTGCCTGTTTAATGTTCTTGAGCTTTGCctcatgatttggatttgtttactATTGCCAGTGATTTTAATAAAGATCATCCTCTGCAATTATTA
>XR_004578817.1
tttttgtttctcttagctttgtgtgtttctgtttttgaccCTGCTCATAGTTTCAATTTTGATTTATGAATTATCCTTGTGTGAAGTTACCTGCCTGTGTTCTCACCTCTGTAGAGATTATGTATAGAGACTATGACACTTTCACTCAACACACTTTGTGTTCAGTGATTTTACACTTTTGTGGcttcttggtaacataacaagctatGTTTTTGTTCTGTAGTTTTATTAActtgatgatataaaataaaaacagaaggacaactgtttatagctgctataagTTTGGACCAAGTTCCTGTGTGTATATAAAGGGCAAATATaacacagaagaagaagaagaagcacatCAGGAGTCATCAGCAGGAGCACCAGACTGCTTACAGCAGGAGCGttactttttttcagtgttaacaTTTTGTCTTGTCAACACTGGAATCGGCACTGGACTCCATTTCTCCCAATGCACTACTGCCTACAAACATGGACATTACGGAGTACAACACCCATGCACCGCGTTCATTGTCACATTCAGTCACTCAATTTCTGATAACACACTTGGGCCCAATCCCATTTCTACCCCTTAGCCCTTCCCCTTTCCCCTACCCTCCGTTTCGCGTGTTCATATGAAGGGGTAGGTGTCTTGATTCTCTTTTGGTTGGAGGGGTAGAGGTAAGGGGAAAGGCCAGACAGCCCTTCAAACGAAGATTTTTCGGGACCACACTTCAAATGAAGGGGTATGAATTCTCAATGTGTGAACAAAAAGACCCACAAATGTAAGCATTATTGACgttaataaagattttaatgaatataaatcatttgttttgttaCATTCAATCGTGTGTTCATATTTATGGTGATGTTATTTtcataaacatattttcatGTCTGATGGCTGTAACCACAGAAGACATTTAGAAATCGATATTTAGAAATCGCTAAACTTTTTTCTCAAATATTGCCAAttcgagagagagaattagGACCTAGATGACGTATGATGACGTGTAACAGTATAGTAGTGGTGTCCCGATTCTTAGGGGAATATTTTCACCCCTACCCCTTGACACTCTGTTTCAAGGGACAAGGGGAATGGGGTAGGCATAGGGGTAGGGGTAGGTGAAGGGGTATAAAATAGAATTGGGATTGGGCCTTGGACTCTATtaccacacacactgtttaagcACATTCACTGCAACAACCCATTGCCAAGGTTTTgttcagttcctgttctcacctgaCATACTAAGCCTTTGTTTGATGGTTACTAATTCTGGTTTGAACCCTTGTTTTTGCCTTTGacttttgtcttgttctttgaTATCAATTTGTACAGCAGCTGATGATCTGCCTGTTTAATGTTCTTGAGCTTTGCctcatgatttggatttgtttactATTGCCAGTGATTTTAATAAAGATCATCCTCTGCAATTATTA

Function

GO: NA

KEGG:

id description
ko04110 Cell cycle
ko04218 Cellular senescence

RNA

RNA id representative length rna type GC content exon number start site end site
TU169966 False 501 lncRNA 0.36 3 5192061 5193287
XR_004578816.1 True 1548 lncRNA 0.39 4 5192067 5194949
XR_004578817.1 False 1443 lncRNA 0.39 3 5192067 5194949

Neighbor

gene id symbol gene type direction distance location
LOC117597937 lrrtm2,LOC108274667,LOC107750357,LOC107680618 coding upstream 286198 4902900 ~ 4905863 (+)
si:dkey-206d17.12 LOC108275399 coding upstream 501448 4671050 ~ 4690613 (+)
thrap3b LOC108274713,LOC107734038,LOC107551756 coding upstream 560635 4606321 ~ 4631426 (+)
map7d1b map7d1,LOC108274711,LOC108438234,LOC107734037,LOC107551771,LOC107669943 coding upstream 598473 4537496 ~ 4593588 (+)
stpg1 stpg1 coding upstream 661075 4525615 ~ 4530986 (+)
LOC113547138 lrrtm2,LOC107680618,LOC107750357 coding downstream 219968 5414917 ~ 5420160 (+)
LOC113547141 mchr2,LOC108274669,LOC108436838 coding downstream 370372 5565321 ~ 5582749 (+)
LOC113547120 LOC108275395,LOC108439812,LOC105903016 coding downstream 643677 5838626 ~ 5850058 (+)
LOC113547110 LOC108275396,LOC108439811,LOC105903007 coding downstream 659281 5854230 ~ 5861207 (+)
n4bp3 LOC108274652 coding downstream 670508 5865457 ~ 5903463 (+)
G143510 NA non-coding upstream 81021 5110709 ~ 5111040 (+)
G143494 NA non-coding upstream 282538 4909320 ~ 4909523 (+)
G143451 NA non-coding upstream 477958 4713200 ~ 4714103 (+)
G143450 NA non-coding upstream 484909 4706907 ~ 4707152 (+)
G143448 NA non-coding upstream 488278 4703562 ~ 4703783 (+)
G143529 NA non-coding downstream 163690 5358639 ~ 5375744 (+)
G143532 ctnna1,LOC107594905,LOC107680619 non-coding downstream 167312 5362261 ~ 5377117 (+)
G143559 NA non-coding downstream 230468 5425417 ~ 5426525 (+)
G143566 NA non-coding downstream 258210 5453159 ~ 5454085 (+)
G143569 NA non-coding downstream 287669 5482618 ~ 5487228 (+)
fhl3b fhl3,LOC108438237,LOC107734040,LOC107551770,LOC107681628 other upstream 682813 4484833 ~ 4509248 (+)
G142576 NA other upstream 1729890 3397670 ~ 3462171 (+)
LOC113523845 NA other upstream 1795994 3384180 ~ 3396067 (+)
LOC117598067 NA other upstream 2383424 2559811 ~ 2808637 (+)
gpx3 gpx3 other downstream 545958 5740907 ~ 5747944 (+)
LOC113547098 deptor,LOC108274614,LOC108442483,LOC107685573 other downstream 1392262 6587211 ~ 6593605 (+)
G144353 NA other downstream 1585040 6779989 ~ 6919661 (+)
LOC113547145 NA other downstream 1588567 6783516 ~ 6785437 (+)
LOC117598156 NA other downstream 1602023 6796972 ~ 6798904 (+)

Expression


Co-expression Network