G143532 (ctnna1,LOC107594905,LOC107680619)


Basic Information

Item Value
gene id G143532
gene name ctnna1,LOC107594905,LOC107680619
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 5362261 ~ 5377117 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU169989
CAGACACGACGAGCTCTCCTCCCAGGTTCTGCACTTCGGCCTTCACCTTGCTGCAGATGTTGAGCTGGTGGCAGTAGAGAGCGATACGCTGCAGGTAGGCCAGCAGATCCTGCTTACATGCTGagtcaggacaTTGATCAGCGATGGTACGTCCCAGCTTGTCCATTCTAGACCCAGCCTCGGCAATCTTCTTAGCAGCGCTGATGACGTCTGatgtgttcttcagtggccctTTCCc

Function

symbol description
ctnna1 Enables actin filament binding activity and cadherin binding activity. Acts upstream of or within tissue homeostasis. Located in adherens junction; cell cortex; and microvillus. Part of catenin complex. Human ortholog(s) of this gene implicated in patterned macular dystrophy 2. Orthologous to human CTNNA1 (catenin alpha 1).

NR:

description
PREDICTED: catenin alpha-1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU169989 True 238 lncRNA 0.55 2 5362261 5377117

Neighbor

gene id symbol gene type direction distance location
LOC117597937 lrrtm2,LOC108274667,LOC107750357,LOC107680618 coding upstream 456398 4902900 ~ 4905863 (+)
si:dkey-206d17.12 LOC108275399 coding upstream 671648 4671050 ~ 4690613 (+)
thrap3b LOC108274713,LOC107734038,LOC107551756 coding upstream 730835 4606321 ~ 4631426 (+)
map7d1b map7d1,LOC108274711,LOC108438234,LOC107734037,LOC107551771,LOC107669943 coding upstream 768673 4537496 ~ 4593588 (+)
stpg1 stpg1 coding upstream 831275 4525615 ~ 4530986 (+)
LOC113547138 lrrtm2,LOC107680618,LOC107750357 coding downstream 37800 5414917 ~ 5420160 (+)
LOC113547141 mchr2,LOC108274669,LOC108436838 coding downstream 188204 5565321 ~ 5582749 (+)
LOC113547120 LOC108275395,LOC108439812,LOC105903016 coding downstream 461509 5838626 ~ 5850058 (+)
LOC113547110 LOC108275396,LOC108439811,LOC105903007 coding downstream 477113 5854230 ~ 5861207 (+)
n4bp3 LOC108274652 coding downstream 488340 5865457 ~ 5903463 (+)
LOC117598093 NA non-coding upstream 167312 5192061 ~ 5194949 (+)
G143510 NA non-coding upstream 251221 5110709 ~ 5111040 (+)
G143494 NA non-coding upstream 452738 4909320 ~ 4909523 (+)
G143451 NA non-coding upstream 648158 4713200 ~ 4714103 (+)
G143450 NA non-coding upstream 655109 4706907 ~ 4707152 (+)
G143559 NA non-coding downstream 48300 5425417 ~ 5426525 (+)
G143566 NA non-coding downstream 76042 5453159 ~ 5454085 (+)
G143569 NA non-coding downstream 105501 5482618 ~ 5487228 (+)
G143577 NA non-coding downstream 114177 5491294 ~ 5491838 (+)
G143601 NA non-coding downstream 223246 5600363 ~ 5604660 (+)
fhl3b fhl3,LOC108438237,LOC107734040,LOC107551770,LOC107681628 other upstream 853013 4484833 ~ 4509248 (+)
G142576 NA other upstream 1900090 3397670 ~ 3462171 (+)
LOC113523845 NA other upstream 1966194 3384180 ~ 3396067 (+)
LOC117598067 NA other upstream 2553624 2559811 ~ 2808637 (+)
gpx3 gpx3 other downstream 363790 5740907 ~ 5747944 (+)
LOC113547098 deptor,LOC108274614,LOC108442483,LOC107685573 other downstream 1210094 6587211 ~ 6593605 (+)
G144353 NA other downstream 1402872 6779989 ~ 6919661 (+)
LOC113547145 NA other downstream 1406399 6783516 ~ 6785437 (+)
LOC117598156 NA other downstream 1419855 6796972 ~ 6798904 (+)

Expression


Co-expression Network