G143566


Basic Information

Item Value
gene id G143566
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 5453159 ~ 5454085 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU170028
TTGGTGAAGATTCAAAACAGTAGGACATTTAATATCAAATCAGCGGCTTCCAAAAACTAAgactgttaataaataaattaatagttaataataaataaataaataatttattttaaaaagttattacGACACCCATGATATCGCAAAAAGTgtattgtaatgtaatgcaTCACATTATTGATATTTCATCATCATATCCCTCTTTCTTACTGAAGTTTCTAATCCAACTTGTTTTTTATAGTCATTTTCAttcaatatgttttaaaaataacaaattaaaagaaaaattctaAGAGCTGAAACAGTCACAGTCTCGTGCTTAACAGATTTGCCACAGTAACTGAAAACAAGCTGCAGTTAAAgtgttttttcagtgtgtaaatTGCTATGCGAGGTGTTTACATAATAACTGTGCTAttgtatttaaaagaaaaaaacacatctacagAGGCTGCCTTCGTGATATTCTCAGAGATTTCTGCAGGAGAAATGACCGAGACGCAGCTCCTTTCACTACTCAACACTTCACTTCACGGTGAAAAAAGGCGTGACAGCTTGGAGATTTGGGAACCCACTCAATCTACGTGACGATAAGTGATTAAAACGCTGCTTTAAGAGCCGCTAGCTACGACGCAGCACGCCAAATTCAACTGATCTCGACTAGGACTGCGGCTCTAAACCGTCCGATAGCGCCAATAAAACACAGACGTGAACGAGTGAAAGATTTCTGTGGAGATCGAAAGCACTGGCGGCAGAGGGTCACTTCTTCATGGACGGCCATCATTAGCGGACGCAGTTTCTGTTGTGCTCTGATCCAGCTTTTATACCTCGCCCAGAACAGTATGGAGGAAAACAAGGTCAGAGTAAAGCAGGTCCAACCACTGAACACacc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU170028 True 892 lncRNA 0.38 2 5453159 5454085

Neighbor

gene id symbol gene type direction distance location
LOC113547138 lrrtm2,LOC107680618,LOC107750357 coding upstream 32999 5414917 ~ 5420160 (+)
LOC117597937 lrrtm2,LOC108274667,LOC107750357,LOC107680618 coding upstream 547296 4902900 ~ 4905863 (+)
si:dkey-206d17.12 LOC108275399 coding upstream 762546 4671050 ~ 4690613 (+)
thrap3b LOC108274713,LOC107734038,LOC107551756 coding upstream 821733 4606321 ~ 4631426 (+)
map7d1b map7d1,LOC108274711,LOC108438234,LOC107734037,LOC107551771,LOC107669943 coding upstream 859571 4537496 ~ 4593588 (+)
LOC113547141 mchr2,LOC108274669,LOC108436838 coding downstream 111236 5565321 ~ 5582749 (+)
LOC113547120 LOC108275395,LOC108439812,LOC105903016 coding downstream 384541 5838626 ~ 5850058 (+)
LOC113547110 LOC108275396,LOC108439811,LOC105903007 coding downstream 400145 5854230 ~ 5861207 (+)
n4bp3 LOC108274652 coding downstream 411372 5865457 ~ 5903463 (+)
ppp2caa ppp2ca,LOC107594878,LOC107750370,LOC108439805,LOC105903939 coding downstream 513657 5967742 ~ 5975213 (+)
G143559 NA non-coding upstream 26634 5425417 ~ 5426525 (+)
G143532 ctnna1,LOC107594905,LOC107680619 non-coding upstream 76042 5362261 ~ 5377117 (+)
G143529 NA non-coding upstream 77415 5358639 ~ 5375744 (+)
LOC117598093 NA non-coding upstream 258210 5192061 ~ 5194949 (+)
G143510 NA non-coding upstream 342119 5110709 ~ 5111040 (+)
G143569 NA non-coding downstream 28533 5482618 ~ 5487228 (+)
G143577 NA non-coding downstream 37209 5491294 ~ 5491838 (+)
G143601 NA non-coding downstream 146278 5600363 ~ 5604660 (+)
LOC117598079 NA non-coding downstream 156477 5610562 ~ 5613308 (+)
G143622 synpo non-coding downstream 195009 5649094 ~ 5652886 (+)
fhl3b fhl3,LOC108438237,LOC107734040,LOC107551770,LOC107681628 other upstream 943911 4484833 ~ 4509248 (+)
G142576 NA other upstream 1990988 3397670 ~ 3462171 (+)
LOC113523845 NA other upstream 2057092 3384180 ~ 3396067 (+)
LOC117598067 NA other upstream 2644522 2559811 ~ 2808637 (+)
gpx3 gpx3 other downstream 286822 5740907 ~ 5747944 (+)
LOC113547098 deptor,LOC108274614,LOC108442483,LOC107685573 other downstream 1133126 6587211 ~ 6593605 (+)
G144353 NA other downstream 1325904 6779989 ~ 6919661 (+)
LOC113547145 NA other downstream 1329431 6783516 ~ 6785437 (+)
LOC117598156 NA other downstream 1342887 6796972 ~ 6798904 (+)

Expression


Co-expression Network