G143569


Basic Information

Item Value
gene id G143569
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 5482618 ~ 5487228 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU170031
TAAAGAACTCAAACAGAAACTGTGTCAGACAGAAGTGCCTTCTGATGCCAAGTCGATCACTCACCTGACACATTTCACCTGAAATGTAACCTCAAAACAGTGTCTGATTTCACAAAGAGGAAACAGCGAAGGGAAGTGAACAAGGACGTGTTTAGAAACATAACCACCACCTTTCAACAGACAGgtgctttttgttttcaaaTCCTGCAAAAACAATAGAGCTAAGAGGAATGTACCTTGCTTGCGGACGTCCTCTACGGCGGCGGTGAGCTCCTCTTTGAGAAACTGGCTCTCCTTGGCGATCTTCTCGCCTTTCTCCAGGAAGTTCTGCGTGGCGCTCTCCACCGAGGCGGCCAGAACGTGCGCCTTTTTGGAGCGGCCCTTCTTTTTATTGGACGGGCCTTTGTTGCTCGAGTTCACCAGAGTAGTCACCTAGACTGGGTGACGAGCGGCTCCAGGAGTCTTTCCACAGCCAGCGTGCGGATCTCCAGGCTCTTGGGGTCCCATTTGAAGTTGATGTTGGGGGTGTTGATGGCCGTcatgttctcagagggtCCAAAAAACCAAACAACTTGAGTGACGCGCTTCAAAATGGAGGATTAAAAAATTCCCGTCGTGCTGAAAACTTTTCTCCTGTCTCTTATTTccctaaaaataaaactcacccacacacaggaAGGCGAGGAAAACTCCCTAACCCGTGTCCAAGCTCAGAGAAGTTAAAGTGAGCAATTAACCGACACTTTGGTTTGTTTGAAAGAGTTTCGCTGTGAATGCAGTCTCGCTTTTTCGCCTTTCCTCACACTGCAGCCTGGGATCAGCTATGGGAGGAGGACACGGTTGCCAGATTGCCAGAAATaac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU170031 True 862 lncRNA 0.49 3 5482618 5487228

Neighbor

gene id symbol gene type direction distance location
LOC113547138 lrrtm2,LOC107680618,LOC107750357 coding upstream 62458 5414917 ~ 5420160 (+)
LOC117597937 lrrtm2,LOC108274667,LOC107750357,LOC107680618 coding upstream 576755 4902900 ~ 4905863 (+)
si:dkey-206d17.12 LOC108275399 coding upstream 792005 4671050 ~ 4690613 (+)
thrap3b LOC108274713,LOC107734038,LOC107551756 coding upstream 851192 4606321 ~ 4631426 (+)
map7d1b map7d1,LOC108274711,LOC108438234,LOC107734037,LOC107551771,LOC107669943 coding upstream 889030 4537496 ~ 4593588 (+)
LOC113547141 mchr2,LOC108274669,LOC108436838 coding downstream 78093 5565321 ~ 5582749 (+)
LOC113547120 LOC108275395,LOC108439812,LOC105903016 coding downstream 351398 5838626 ~ 5850058 (+)
LOC113547110 LOC108275396,LOC108439811,LOC105903007 coding downstream 367002 5854230 ~ 5861207 (+)
n4bp3 LOC108274652 coding downstream 378229 5865457 ~ 5903463 (+)
ppp2caa ppp2ca,LOC107594878,LOC107750370,LOC108439805,LOC105903939 coding downstream 480514 5967742 ~ 5975213 (+)
G143566 NA non-coding upstream 28533 5453159 ~ 5454085 (+)
G143559 NA non-coding upstream 56093 5425417 ~ 5426525 (+)
G143532 ctnna1,LOC107594905,LOC107680619 non-coding upstream 105501 5362261 ~ 5377117 (+)
G143529 NA non-coding upstream 106874 5358639 ~ 5375744 (+)
LOC117598093 NA non-coding upstream 287669 5192061 ~ 5194949 (+)
G143577 NA non-coding downstream 4066 5491294 ~ 5491838 (+)
G143601 NA non-coding downstream 113135 5600363 ~ 5604660 (+)
LOC117598079 NA non-coding downstream 123334 5610562 ~ 5613308 (+)
G143622 synpo non-coding downstream 161866 5649094 ~ 5652886 (+)
G143644 NA non-coding downstream 237652 5724880 ~ 5727587 (+)
fhl3b fhl3,LOC108438237,LOC107734040,LOC107551770,LOC107681628 other upstream 973370 4484833 ~ 4509248 (+)
G142576 NA other upstream 2020447 3397670 ~ 3462171 (+)
LOC113523845 NA other upstream 2086551 3384180 ~ 3396067 (+)
LOC117598067 NA other upstream 2673981 2559811 ~ 2808637 (+)
gpx3 gpx3 other downstream 253679 5740907 ~ 5747944 (+)
LOC113547098 deptor,LOC108274614,LOC108442483,LOC107685573 other downstream 1099983 6587211 ~ 6593605 (+)
G144353 NA other downstream 1292761 6779989 ~ 6919661 (+)
LOC113547145 NA other downstream 1296288 6783516 ~ 6785437 (+)
LOC117598156 NA other downstream 1309744 6796972 ~ 6798904 (+)

Expression


Co-expression Network