G143577


Basic Information

Item Value
gene id G143577
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 5491294 ~ 5491838 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU170039
AATTTTGGagttcagggttttttttttttttgtgaaaagcTAAAAACTGTAACCTGTAATTTCGAATatgttttcaaaacaaaaagaacatgaaatgtACTTTAGTTCATGAATTAaaacatgggggaaaaaaagaaaacctAAAAACTGTAACCTCTGCATGTTtctgggaagtgggaggaaaccggagaacccaggtGACACAGGAGAAGTCATTTTCTCTACTAACAAAAATTATAATCTGTATCATTTGTATATCAGTTTAAATCTGTGCTACAGTGAGAAATGTTGTTGTATGATTGTGGTTTTCACAATCCTCCTTTTTGCCTCTCATTTCTTGCCAGGTCCATGAGGGTCCGAGACAGTGCTGCCCGCGTTTTCATCTCCAGGCCGCAGAATCGAAGCCAAGTGATGGAGGGAGCATGTCGATAATGGACAGGATATCTTATTCATCgttctaaatgaaaaaaaaaacaacacagatcTATGGTCACATGATCAAA

Function

GO: NA

KEGG:

id description
ko04610 Complement and coagulation cascades
ko04972 Pancreatic secretion
ko04974 Protein digestion and absorption
ko05150 Staphylococcus aureus infection

RNA

RNA id representative length rna type GC content exon number start site end site
TU170039 True 503 lncRNA 0.37 2 5491294 5491838

Neighbor

gene id symbol gene type direction distance location
LOC113547138 lrrtm2,LOC107680618,LOC107750357 coding upstream 71134 5414917 ~ 5420160 (+)
LOC117597937 lrrtm2,LOC108274667,LOC107750357,LOC107680618 coding upstream 585431 4902900 ~ 4905863 (+)
si:dkey-206d17.12 LOC108275399 coding upstream 800681 4671050 ~ 4690613 (+)
thrap3b LOC108274713,LOC107734038,LOC107551756 coding upstream 859868 4606321 ~ 4631426 (+)
map7d1b map7d1,LOC108274711,LOC108438234,LOC107734037,LOC107551771,LOC107669943 coding upstream 897706 4537496 ~ 4593588 (+)
LOC113547141 mchr2,LOC108274669,LOC108436838 coding downstream 73483 5565321 ~ 5582749 (+)
LOC113547120 LOC108275395,LOC108439812,LOC105903016 coding downstream 346788 5838626 ~ 5850058 (+)
LOC113547110 LOC108275396,LOC108439811,LOC105903007 coding downstream 362392 5854230 ~ 5861207 (+)
n4bp3 LOC108274652 coding downstream 373619 5865457 ~ 5903463 (+)
ppp2caa ppp2ca,LOC107594878,LOC107750370,LOC108439805,LOC105903939 coding downstream 475904 5967742 ~ 5975213 (+)
G143569 NA non-coding upstream 4066 5482618 ~ 5487228 (+)
G143566 NA non-coding upstream 37209 5453159 ~ 5454085 (+)
G143559 NA non-coding upstream 64769 5425417 ~ 5426525 (+)
G143532 ctnna1,LOC107594905,LOC107680619 non-coding upstream 114177 5362261 ~ 5377117 (+)
G143529 NA non-coding upstream 115550 5358639 ~ 5375744 (+)
G143601 NA non-coding downstream 108525 5600363 ~ 5604660 (+)
LOC117598079 NA non-coding downstream 118724 5610562 ~ 5613308 (+)
G143622 synpo non-coding downstream 157256 5649094 ~ 5652886 (+)
G143644 NA non-coding downstream 233042 5724880 ~ 5727587 (+)
G143757 NA non-coding downstream 419145 5910983 ~ 5912741 (+)
fhl3b fhl3,LOC108438237,LOC107734040,LOC107551770,LOC107681628 other upstream 982046 4484833 ~ 4509248 (+)
G142576 NA other upstream 2029123 3397670 ~ 3462171 (+)
LOC113523845 NA other upstream 2095227 3384180 ~ 3396067 (+)
LOC117598067 NA other upstream 2682657 2559811 ~ 2808637 (+)
gpx3 gpx3 other downstream 249069 5740907 ~ 5747944 (+)
LOC113547098 deptor,LOC108274614,LOC108442483,LOC107685573 other downstream 1095373 6587211 ~ 6593605 (+)
G144353 NA other downstream 1288151 6779989 ~ 6919661 (+)
LOC113547145 NA other downstream 1291678 6783516 ~ 6785437 (+)
LOC117598156 NA other downstream 1305134 6796972 ~ 6798904 (+)

Expression


Co-expression Network