G143601


Basic Information

Item Value
gene id G143601
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 5600363 ~ 5604660 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU170069
tataacatacaGTGTAACAGACCATGTCCCACAATCAAGTCAATAAAcggacataaaaaaaaaactacgcATAAAGACCTCTTCTCAAACCAGAGGCATTGATAGGATCATTTCAACAACTATTTCAGTTCTTCTTTGatgaaaagagtgagagagcacGACAGCTTCCCTCACACGTTTGCAAAAAGCCATGACGATATCGGATTAGAGCAATCACACAAACTAGTTTTAAGAGTGTAGGACGCTACTATAAAGCTGGCTAAATGTTTAACGTAAGAATCTCTATGGCTGAATCGAAACAAAGCCCGTATTTACAGcaccttgcataagtattcacccccccaattaaaacttttccacattttgcggaattgaaatggacttcaGTGGGACTGAATGTTGTGAATCTACACATAATAGTCCGTAATATTGAAGTGTaagaatgaaattttaaaaatgacaaagttgtgactgcaaaagtattcaacctcCCCTTGTTGTTGTGAAACCCTTAAATTAGTTGCCATCATAAGTTACAAAAGTAGTTTCGCAGCAgtggggggtgaatacttatgcaatcgcaaactttaaaaggaaataaataaataattttttatttgtaaataattttgtaaactaTATTGATAGTTATATATCAGCATAATGGGCTATTTTATGTCGAGTCACTACATTTAATCCTGAATGAAGTCAGTTTCAGTataaagttcaagggggtgaatacttatgcaagacaccGGATCTCATTATAAACGTGTGCTACCCTGATTTTACATATTAGTCGGACGAATGGAAACATGGTAAGAGACAGGAGCGTCCTCGGTTCGAGTGATGATCGGATGGTGATGTCAGCCAGGTGGTGTATGTAAAGGAAACTTAGTGGACTCAGATCTTTGAAATCTTTGAGcgtaaaacataaaaactgtgcaaaaaacaaacatttgatCCTCTCGTGTACCTAATGTATTAAATCTGATAGAATGGATTTGAACAAACGTGTATGGAGTCTATGAGGGGGCACTTACTTATGGAAAGTAAGAATGTGGCTTTAGTAGTGCGCACTCTGTCACCTGTCTAgggctgtagtgtgtgtatctatgtgcAAACCCACAATGCACTAAATCATTATAAGTGTGATTATAATTTTTGTAGAATTCATaattagagtttataaaaatgtttgcgATGATCATTACCAACAcaattataatgatttatgaatatgggcttctcaaaaacaaaaaaacacataaagaaataaaataagtaaacatATTGACATGGAATGTCGATCATGTGATCCCAGACGACACATTAACGTTCagacaattcacacacacttcgtTTGGCGAGGAAACGCAGTACATTCACGATGCACAGGTTTCCACGGGGAATGATATGactccaaaaagaaaaaaataaaaataaaaataaaaagaataaaagaaaggcCACTCTGCTGCAATAAAAACTGGAATAAACAAATGTCTGAATAATGGCGTTGGCCTTGTGTGCCTTGTGTCTCCGCCTCTCCTACAGACAGAATGCTGAGAACTTGAACCACGGCGAACGCCACACTCTGTGCACGGCATCCGACgagagaagtttaaaaaaaaaaaaaaaagaaaagaataataagCGCATGCACAACATTCAACTCGTTCACCAACACCGGCAACATGCAGCCATGTTTCATAAAATTCCTACAACACTAACCCTTCCCTGCTGTGTGACGGCTCTGCTTCTAGGGAAATAAAGTGCCTgagcatatacacacatatacacacacacacacacacacacacacacacacacactcctgcagtGCTTTATGGAGGCTAGAAAGAagctacatgtgtgtgtgtgtgtgtatacatggtCCCTATATACCAAAATGTAGCCAAGTGTGAAGACTGAGATGGCATTAGAAGAACTTTTATCCGAATGCACTTGATGTTTGGACTCTTAAGTTCAtttcttttgggttttttttgttttttttgcactgcaGCTACGAGGTTAAAGTAAAATGCTAGATATTAACGGAAGCTTACAGCCTCCAGTTTAGTATTTGATTAGTATTTCGCATTAAATCATCACGCGCTCGACTCCAAACACACAGCCTGGCTCAGTGTACAATTCTATGAGACGTAAATGCTTATTACAGGTTTAATAACACTTTTAAACTTTCCTTATGAATACTTATAGATGTGCCAATAGTGCTAataagaaaatc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU170069 True 2254 lncRNA 0.37 2 5600363 5604660

Neighbor

gene id symbol gene type direction distance location
LOC113547141 mchr2,LOC108274669,LOC108436838 coding upstream 17614 5565321 ~ 5582749 (+)
LOC113547138 lrrtm2,LOC107680618,LOC107750357 coding upstream 180203 5414917 ~ 5420160 (+)
LOC117597937 lrrtm2,LOC108274667,LOC107750357,LOC107680618 coding upstream 694500 4902900 ~ 4905863 (+)
si:dkey-206d17.12 LOC108275399 coding upstream 909750 4671050 ~ 4690613 (+)
thrap3b LOC108274713,LOC107734038,LOC107551756 coding upstream 968937 4606321 ~ 4631426 (+)
LOC113547120 LOC108275395,LOC108439812,LOC105903016 coding downstream 233966 5838626 ~ 5850058 (+)
LOC113547110 LOC108275396,LOC108439811,LOC105903007 coding downstream 249570 5854230 ~ 5861207 (+)
n4bp3 LOC108274652 coding downstream 260797 5865457 ~ 5903463 (+)
ppp2caa ppp2ca,LOC107594878,LOC107750370,LOC108439805,LOC105903939 coding downstream 363082 5967742 ~ 5975213 (+)
LOC113547108 LOC108274551 coding downstream 393807 5998467 ~ 6037800 (+)
G143577 NA non-coding upstream 108525 5491294 ~ 5491838 (+)
G143569 NA non-coding upstream 113135 5482618 ~ 5487228 (+)
G143566 NA non-coding upstream 146278 5453159 ~ 5454085 (+)
G143559 NA non-coding upstream 173838 5425417 ~ 5426525 (+)
G143532 ctnna1,LOC107594905,LOC107680619 non-coding upstream 223246 5362261 ~ 5377117 (+)
LOC117598079 NA non-coding downstream 5902 5610562 ~ 5613308 (+)
G143622 synpo non-coding downstream 44434 5649094 ~ 5652886 (+)
G143644 NA non-coding downstream 120220 5724880 ~ 5727587 (+)
G143757 NA non-coding downstream 306323 5910983 ~ 5912741 (+)
G143766 NA non-coding downstream 318151 5922811 ~ 5923752 (+)
fhl3b fhl3,LOC108438237,LOC107734040,LOC107551770,LOC107681628 other upstream 1091115 4484833 ~ 4509248 (+)
G142576 NA other upstream 2138192 3397670 ~ 3462171 (+)
LOC113523845 NA other upstream 2204296 3384180 ~ 3396067 (+)
LOC117598067 NA other upstream 2791726 2559811 ~ 2808637 (+)
gpx3 gpx3 other downstream 136247 5740907 ~ 5747944 (+)
LOC113547098 deptor,LOC108274614,LOC108442483,LOC107685573 other downstream 982551 6587211 ~ 6593605 (+)
G144353 NA other downstream 1175329 6779989 ~ 6919661 (+)
LOC113547145 NA other downstream 1178856 6783516 ~ 6785437 (+)
LOC117598156 NA other downstream 1192312 6796972 ~ 6798904 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G83764 NA non-coding CI01000013 null 9244239 ~ 9244638 (-)