G143757


Basic Information

Item Value
gene id G143757
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 5910983 ~ 5912741 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU170248
tctgcttttatcTCAGATGCAGGTTTAATAAACATACTGTGATGATAGAAGATAGATATTTACAATAGAAGTAGCAGGAAATGCAGATTTGTTATATATTGCTAAACCAAAATGAAGCTCGAAGGCTGTGACTCCCTGATGCCTTGGTGATGCGTCTCAAACCAGAATTAGAGTGTATTTTCTTCGTAAAGGGTTGAGAGACACCCGTCTGTTTTGCGGAGATACGAGTGGTTTAAGCAGATCTTAAATGCTCCTCagtggaagaaaaagaaattgtgaTGAGCGTGATAACGGAACCACTGGCTAGGTTTAGTTTAACGTTGGGGTTAAGATTAGCTATGATCAGATTAGCACACTGAGCTGCTGCTTTATCAGATACACACCAACTGCTGAGGTCATGTTGTAGGTGTAacagttactgactgtagcaCGTGGAGTAATCTGGGGGTTGAGCAAATTCATTTCAGGTAACAACAGGGCAGAGTTTTGATAGTTAGTCCAAAGTATCTACTACATAGCTTCACATTGTACATTATATACAAATTTTCCATATATAGATTTTCACCAATGTTGCTGTGAAAGCCCTAAATCAGTTCTTTGGGAAAATGACATTGTTACAGTGTCAAATTTTTAGCTTGTGAATACAGTTACATAATTAGCACATTTTTGccagtagctgagtttattgctctagtctgccccctagtggagtAACCGAGACTAGCTCCTATTCCAGACGATTGTAGTTACAGAGTGGTTTCTAAATTGATTTGGTGAGCCGGATTAGAAGCTTTAGTACCCGCGGGCCGTATATTTGACATCTGCTGTGTACAGTGTATGTGCTGTGGTCAGAAAAGATATATCGTATAAAACACACTGTTCGTGGCCTAATACGAGATTTACTCTCTAACTGTACACCTACAACATGAACAACACGGTGGGAGTGTGTAATAAATCGACAGCTGTCCTAACACAcatttatagtgtattatagagTATTAGAGATGCATTAAATGGTATAAAACACAGGGTTTGTATTGATGGGTTTTGTGTATTACACTGAAGTGTGGATATTTTCACAAGAACATTTTGAAGACACTGGTTAAGCATGCTCCTGAGCAGTTTCTCCatctagaacacacacacacacacacacacctgattcagctcatgAACGGTTTTGGGAAACAAATGCTTCATTTAATCCAGCAGggtaaaacactgaaacactgtgaGCTAACTCTCTGCACTCAGTGTGCAGCTCCGTGGCTGATCTCTGCTCCAGGAATCACAAACCTGATCTCACACAGCCATAATGACGACTGTCTGCTTCTGAATCTGATTGTCTACtgaagcaaaataaacaaaaggaaatatttgTAGCACACATGTGGGAGATGACCAGGTTTGTTTGCCTCACGTGTTAGGATATCTAAtgctaaacattttttaaatccctaAATTCAACCATCAGGTCAAGCTATGCTGGTTCTTAACAGTttgaaatgtacacaatttccCTCAGATGTTGTCGATCAAACAAAACATGTCTGGTGTTTGATGTACTAGGCTTGAGTAGACTGAGGATGCTATCAGAAAACACGGAGTGAGTCCGTCTCTCTTGATGGAGATCAAACTGGAAGATCTGTTTATCTAGAAAACATCTACAGTGTTTCACACAGGAGCCAACAAATCTCTCTCTACGTTTTGTATGGAAAAATCAGGAGAGAAATCACGCTTGGCCAACTTTTCATgcatt
>TU170250
CAGGAAATGCAGATTTGTTATATATTGCTAAACCAAAATGAAGCTCGAAGGCTGTGACTCCCTGATGCCTTGGTGATGCGTCTCAAACCAGAATTAGAGTGTATTTTCTTCGTAAAGGGTTGAGAGACACCCGTCTGTTTTGCGGAGATACGAGTGGTTTAAGCAGATCTTAAATGCTCCTCagtggaagaaaaagaaattgtgaTGAGCGTGATAACGGAACCACTGGCTAGGTTTAGTTTAACGTTGGGGTTAAGATTAGCTATGATCAGATTAGCACACTGAGCTGCTGCTTTATCAGATACACACCAACTGCTGAGGTCATGTTGTAGGTGTAacagttactgactgtagcaCGTGGAGTAATCTGGGGGTTGAGCAAATTCATTTCAGGTAACAACAGGGCAGAGTTTTGATAGTTAGTCCAAAGTATCTACTACATAGCTTCACATTGTACATTATATACAAATTTTCCATATATAGATTTTCACCAATGTTGCTGTGAAAGCCCTAAATCAGTTCTTTGGGAAAATGACATTGTTACAGTGTCAAATTTTTAGCTTGTGAATACAGTTACATAATTAGCACATTTTTGccagtagctgagtttattgctctagtctgccccctagtggagtAACCGAGACTAGCTCCTATTCCAGACGATTGTAGTTACAGAGTGGTTTCTAAATTGATTTGGTGAGCCGGATTAGAAGCTTTAGTACCCGCGGGCCGTATATTTGACATCTGCTGTGTACAGTGTATGTGCTGTGGTCAGAAAAGATATATCGTATAAAACACACTGTTCGTGGCCTAATACGAGATTTACTCTCTAACTGTACACCTACAACATGAACAACACGGTGGGAGTGTGTAATAAATCGACAGCTGTCCTAACACAcatttatagtgtattatagagTATTAGAGATGCATTAAATGGTATAAAACACAGGGTTTGTATTGATGGGTTTTGTGTATTACACTGAAGTGTGGATATTTTCACAAGAACATTTTGAAGACACTGGTTAAGCATGCTCCTGAGCAGTTTCTCCatctagaacacacacacacacacacacacctgattcagctcatgAACGGTTTTGGGAAACAAATGCTTCATTTAATCCAGCAGggtaaaacactgaaacactgtgaGCTAACTCTCTGCACTCAGTGTGCAGCTCCGTGGCTGATCTCTGCTCCAGGAATCACAAACCTGATCTCACACAGCCATAATGACGACTGTCTGCTTCTGAATCTGATTGTCTACtgaagcaaaataaacaaaaggaaatatttgTAGCACACATGTGGGAGATGACCAGGTTTGTTTGCCTCACGTGTTAGGATATCTAAtgctaaacattttttaaatccctaAATTCAACCATCAGGTCAAGCTATGCTGGTTCTTAACAGTttgaaatgtacacaatttccCTCAGATGTTGTCGATCAAACAAAACATGTCTGGTGTTTGATGTACTAGGCTTGAGTAGACTGAGGATGCTATCAGAAAACACGGAGTGAGTCCGTCTCTCTTGATGGAGATCAAACTGGAAGATCTGTTTATCTAGAAAACATCTACAGTGTTTCACACAGGAGCCAACAAATCTCTCTCTACGTTTTGTATGGAAAAATCAGGAGAGAAATCACGCTTGGCCAACTTTTCATgcatt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU170248 True 1759 lncRNA 0.40 1 5910983 5912741
TU170250 False 1685 lncRNA 0.40 1 5911057 5912741

Neighbor

gene id symbol gene type direction distance location
n4bp3 LOC108274652 coding upstream 7520 5865457 ~ 5903463 (+)
LOC113547110 LOC108275396,LOC108439811,LOC105903007 coding upstream 49776 5854230 ~ 5861207 (+)
LOC113547120 LOC108275395,LOC108439812,LOC105903016 coding upstream 60925 5838626 ~ 5850058 (+)
LOC113547141 mchr2,LOC108274669,LOC108436838 coding upstream 328234 5565321 ~ 5582749 (+)
LOC113547138 lrrtm2,LOC107680618,LOC107750357 coding upstream 490823 5414917 ~ 5420160 (+)
ppp2caa ppp2ca,LOC107594878,LOC107750370,LOC108439805,LOC105903939 coding downstream 55001 5967742 ~ 5975213 (+)
LOC113547108 LOC108274551 coding downstream 85726 5998467 ~ 6037800 (+)
LOC113547149 LOC108274551,LOC108274655,LOC108266882,LOC108260750,LOC108266219 coding downstream 113055 6025796 ~ 6034619 (+)
LOC113547147 LOC108274655 coding downstream 126987 6039728 ~ 6075245 (+)
lingo4a LOC108274662 coding downstream 165176 6077917 ~ 6086079 (+)
G143644 NA non-coding upstream 183396 5724880 ~ 5727587 (+)
G143622 synpo non-coding upstream 258097 5649094 ~ 5652886 (+)
LOC117598079 NA non-coding upstream 297675 5610562 ~ 5613308 (+)
G143601 NA non-coding upstream 306323 5600363 ~ 5604660 (+)
G143577 NA non-coding upstream 419145 5491294 ~ 5491838 (+)
G143766 NA non-coding downstream 10070 5922811 ~ 5923752 (+)
G143772 LOC108274654,LOC104947748,LOC106517727,LOC106603477 non-coding downstream 19840 5932581 ~ 5936329 (+)
G143832 snrpg,LOC107671841,LOC107594056,LOC107598637 non-coding downstream 65361 5978102 ~ 5984378 (+)
G143987 NA non-coding downstream 443576 6356317 ~ 6357920 (+)
LOC113547099 NA non-coding downstream 509395 6422136 ~ 6428434 (+)
gpx3 gpx3 other upstream 163039 5740907 ~ 5747944 (+)
fhl3b fhl3,LOC108438237,LOC107734040,LOC107551770,LOC107681628 other upstream 1401735 4484833 ~ 4509248 (+)
G142576 NA other upstream 2448812 3397670 ~ 3462171 (+)
LOC113523845 NA other upstream 2514916 3384180 ~ 3396067 (+)
LOC117598067 NA other upstream 3102346 2559811 ~ 2808637 (+)
LOC113547098 deptor,LOC108274614,LOC108442483,LOC107685573 other downstream 674470 6587211 ~ 6593605 (+)
G144353 NA other downstream 867248 6779989 ~ 6919661 (+)
LOC113547145 NA other downstream 870775 6783516 ~ 6785437 (+)
LOC117598156 NA other downstream 884231 6796972 ~ 6798904 (+)
trnaw-cca_10 NA other downstream 1038331 6951072 ~ 6951422 (+)

Expression


Co-expression Network