G143772 (LOC108274654,LOC104947748,LOC106517727,LOC106603477)


Basic Information

Item Value
gene id G143772
gene name LOC108274654,LOC104947748,LOC106517727,LOC106603477
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 5932581 ~ 5936329 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU170268
TActtataatattttcatatacaCAAAGGAGTACAGTACAGTTGAAGAGGATTCTAACATGGCAGCAACGACTTTGCCCCACTTTTCCCCAGACCAAACCGGTGTGTGTTTCGTCTTCTCTGCAGCACCAAAGCACACTCGGATTCGGCAACTAACACgccatacaaaaacacacatacgcacacacactcacgcacacgcgcacacacagaaaTGTATGACAAAAGTGTAAAACAGTGAGAACTGATTCTACAAAGTCCATAAATATGAAGAGACTAAAGGAAAGCAAACATGCTTTTTTTGACAAGAAAGATGGCTGCTGCAAAGCTTACAACAAAAAGAACGAAAACAAGTGGGGCAGAATCTTTAACATTCAGTGGATATCAAAAGAGAATGATTGTAAGGCCAAAACATTGttcaaacaataataaaacatgagggTCCTTCATTTGGAACAGCAGTCTCTTGCTTGCGCTGGGTAAATCACTAGTCGGGAAGTTTTCTCATTCCAGTCTGTTGGATcggaTACAGTCCATGACTGGAGTTCGGCACGGATCATTTTTGCAAAAACCCTCAAAACCCTCTGAAGAATCGTTTTTGAGGATATTTCTTGAAATGTTTTCACTGAGGCTCTCTGCATTCACTGAATTCAGTGTCATGAGTATACTATTAGTTTTGAGTAATTAAATAGACAAAccaaacaatataaaaataagaactGAAGATTAGAATTGTAGAATTGAAGAGTAGTATTTCGTTTAAAAGTCCATGCACTGAACCGCTTTCACGAATCCTGACTGAGTCGAGGTGTGTAAAGTTTATTTCGACAGCAGTTAGTTACCTTAGATAAAGGCGTACGTACAAATGAACATGTCTCTCCTACAACGTGCAGCACAGAAATCATACCCGATGCCTGGAATGTCATAATAAAGCTCAAAGTAAAACTGTAGTTCTGGTCATTTCGGTTTGTTTTGCTGTCGTCTCCACCACAGAAGGCAGTTCTTTTCCAACTCTCTACTCCACCTCTTAAAGTCGAAATTCACGAGTGGGGATTAAGTCAAAATCCTGAAAATCCTGTTTGGTGTGATGCAGTTAAACTGTTAATGTACTcttgatcactttttttttttttatccactgtTAGGGCTTGTGATTGCCAAATGCTTCTTCTAATGAAATTTATTGTCACCAAATTCTGAATGGGACACACAGAACCAGCCTACTAATTATACGAAAGCATGGTCAATATCCAAAAGTGCATCACTGAGATCAAGGATCATCAGTCTTATCTGAATTTCACCCaggtggctgcaggttttcattctaaCTCAGCAGGACAAACACCTGATTCCATCTCAAATATAATTTGAAGTGGAGAATTATAATTTAGTACAGCTACTAACTGGCTGAGTGGTGCGGTGGTCCAGTTACAGCGGTGGTCCAGTTACAGCGTACACACAAGTGGGATTTGACTACCAGAGTCTCGATTCTGAACGAGTTATTTAAATCTGTCAAGCTATAACTTCCAAGATTTGTTCATCACTAATATGACCTTCCTGGCTCTAAAGGTTTCCTGGTACCACCTGGTATCCTTAAATAACCACAACTGGGCCAAGGCTCACTTTTTAcagaatctgtttttttatggAAGAACTGAgaaactaattaactaatttgACCCAAACACCAATCTATGTAATCAGAACCAGTGTTATCCATTTAAAAGTCCAGTTTTTTTTAGATTCATGTGTTCTTAAAGACTTGGAGTCATCTTGACAAGTGTTGCTGCCCCACTTCAAGCTTACCAGATGTCTTCCATTGTTCCATCCCCGTCCATGGTTTGCCaaagataaaaatgtaaacagtagGTGGAgatgacaaaacaaaaagaaacacaaagaagCACCAGACAGTAACTTTATACCCAATACAGGACTTCTGACTGAACAGCCAAAGGTCCACAGCACCACTTTATTTTTCCAGTCCCCTTTGTCAAAGTGGACTTGGTTAGAGAAGGCAAGCTGACCTCTTTTTTAATCTCAGCATGTTGCCCAAGTCCGTTAGAGTCAAAAAGAGCTGCTTTGCATCCAGCTGAGCGCGCACTAGCTGATCTCTGAGCCCCTCCAGATAAGAGcgctgatctgagatcagattCCCTGCTTCATTCCTACAGGCTACAAAGCGTAACGAACGGAGAGATGGAACTTTGCCTATCTCGCTGCCCAATGACTGAGACCGTCTAGCGAGCGAGTGCgtgatggatgaatggatggatgaacggatggatggatttgtGGATAGTAAACACAAATTGCTCACTTCCCCCTATATGACTCGTCCACTAAACCTTCAGCGTCAAAGTCTTCATCCACGCAACTGTCGTCATCCCACTCGTCCTCATCCCACTCCTTTTCAAATTCCTCCTCTTCGTCCTCATCTTCGAATTCATCGTAGTCCACCTCCCCGTCCTCATCTTCGTCTTCTATGATCTCGAGTCCCATATCCTCACCCCCAATCAGCCCTTCCACCACCTCTCCATCCTCTACCTCGGCCACGACGTCATCTTTCACCTCTTTAGACAGAGAAGATGCAGGAAGCAGGTCTTCGTCCAACACTACGTCATCCTCAAAGGGTACTCGCTGGCTGCTGTAGGGCGCTCTCCTGGGGGCGGGAGGGATGTAGAGCTCACTGGTGGGCGGAGTTAACCTGCACTTGGCTACGCTGGGTAGCGCGGATAAGACAGGCATTCCCGGGGTGTACTCGCGAATCTCTCCAGGTTCCAGGGGGTCGGGGCCACACGGGTCGTGCTCGCTGCACGAGAGCTTGCCGTCCAACTTGGAGATGAAGAGCATGCCGTCACGATGCTGCTTGCAGTACGAGCTGGGGCACATCTCGCAGAACGATGCCGCCTCCTTGCCACACTCGTTACACTGGTGCCACGGGCAC

Function

NR:

description
PREDICTED: histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20 specific-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU170268 True 2946 lncRNA 0.44 2 5932581 5936329

Neighbor

gene id symbol gene type direction distance location
n4bp3 LOC108274652 coding upstream 29118 5865457 ~ 5903463 (+)
LOC113547110 LOC108275396,LOC108439811,LOC105903007 coding upstream 71374 5854230 ~ 5861207 (+)
LOC113547120 LOC108275395,LOC108439812,LOC105903016 coding upstream 82523 5838626 ~ 5850058 (+)
LOC113547141 mchr2,LOC108274669,LOC108436838 coding upstream 349832 5565321 ~ 5582749 (+)
LOC113547138 lrrtm2,LOC107680618,LOC107750357 coding upstream 512421 5414917 ~ 5420160 (+)
ppp2caa ppp2ca,LOC107594878,LOC107750370,LOC108439805,LOC105903939 coding downstream 31413 5967742 ~ 5975213 (+)
LOC113547108 LOC108274551 coding downstream 62138 5998467 ~ 6037800 (+)
LOC113547149 LOC108274551,LOC108274655,LOC108266882,LOC108260750,LOC108266219 coding downstream 89467 6025796 ~ 6034619 (+)
LOC113547147 LOC108274655 coding downstream 103399 6039728 ~ 6075245 (+)
lingo4a LOC108274662 coding downstream 141588 6077917 ~ 6086079 (+)
G143766 NA non-coding upstream 8829 5922811 ~ 5923752 (+)
G143757 NA non-coding upstream 19840 5910983 ~ 5912741 (+)
G143644 NA non-coding upstream 204994 5724880 ~ 5727587 (+)
G143622 synpo non-coding upstream 279695 5649094 ~ 5652886 (+)
LOC117598079 NA non-coding upstream 319273 5610562 ~ 5613308 (+)
G143832 snrpg,LOC107671841,LOC107594056,LOC107598637 non-coding downstream 41773 5978102 ~ 5984378 (+)
G143987 NA non-coding downstream 419988 6356317 ~ 6357920 (+)
LOC113547099 NA non-coding downstream 485807 6422136 ~ 6428434 (+)
G144221 NA non-coding downstream 608043 6544372 ~ 6544916 (+)
G144256 NA non-coding downstream 692022 6628351 ~ 6684107 (+)
gpx3 gpx3 other upstream 184637 5740907 ~ 5747944 (+)
fhl3b fhl3,LOC108438237,LOC107734040,LOC107551770,LOC107681628 other upstream 1423333 4484833 ~ 4509248 (+)
G142576 NA other upstream 2470410 3397670 ~ 3462171 (+)
LOC113523845 NA other upstream 2536514 3384180 ~ 3396067 (+)
LOC117598057 NA other upstream 3239739 2687795 ~ 2692842 (+)
LOC113547098 deptor,LOC108274614,LOC108442483,LOC107685573 other downstream 650882 6587211 ~ 6593605 (+)
G144353 NA other downstream 843660 6779989 ~ 6919661 (+)
LOC113547145 NA other downstream 847187 6783516 ~ 6785437 (+)
LOC117598156 NA other downstream 860643 6796972 ~ 6798904 (+)
trnaw-cca_10 NA other downstream 1014743 6951072 ~ 6951422 (+)

Expression


Co-expression Network