G144256


Basic Information

Item Value
gene id G144256
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 6628351 ~ 6684107 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU170834
tatatatatatatatatatatatatatatatatatatatatatatatatatataTACTGGAATTTCATTGTTGGTGATTTATGTATAGCgatatttaatgttttctttgtctGTATAGTATAATGTTATACATCTGGTAGTATAACATTAATATTCTATACATGTAACTACTAAACCttataagttaaaaaaaaaatttaaaaaggacATTGACAGCCCTAGTAATTTCTGTTACATGTGATGTGACATTGTGGTGAGGTTCTCCGTAATAGATTATGCACTGTATCACAACACCCATTCATGCAGGTAGCAACTGTAGAGTTTTAACTACAGCctttattatagatttatttttatcatttttttggGCACACACTTTTATCCAGAGCTTGTAAGTGAGGCAGACTACAatcaaagcacagagctgagcagttgaaggttaagtgGCTCTCTGGTAGACCTGGGACCGATCATAAGCACCGAGCTACTACTACATGGGTAAGATTTAAAATTCTATAAGTATGATAAGATTTAAAAGGGCTGATTTGAAAGATTTGGTGGAATGAGAGAAAAGGGCATGCAGAGCAGTGAGGTGTGATGTGTGAAACTCTTTAAGTGCCTGATATACACAGCAGAGATTCTCTTCTTCATTGCCATTTTGCTCTGTCTTTCACTTGCTTCCAGCAATCAGAAGTGTGCTGTTGCTCAGTCAGATATTGTACACTGCCAGTCAAGAATATCTCAACACATGGAGTTTGTTTTGTTACAGCTGATAACCTGTTAGTTCCGCCAGGGCATGGTAATAAAgggagtaaggaataaaacactcggggacctgctgttacagcaaaataatcaacgactgggtggtgtgatgaggcccgatgtgaagcagagttacactTACCACCgagaggttgattattttccaataacaacatccaaatgtgttttattcctcttataccacagcaatttgccatagattacatttttttaatcaaagaatGATGCAAAATTCAAACATCTGACAtcaaactttttatccatttatagttgtaatgttgtggaatttgtGCAAAGAAAAGGTCAGTTCCTGTTGGCATTTACATTGTAGCAGttgtaaacagtcatttcctcgtgaagcttttttgttttttactataagacaaaaatatgcaagaaactagaaagcacaaagtcctgaagactccttccataaatgttttcttacagaaaacttcaccatgtcagtgATTGCAATGATTGATGTTAAATAAGATTAAATATTAGATTACATGGAGTCTTTTCCATACACATCCCTgagaattagttgttactatagaaaagataatgtattaaaatgagtacattcatataaatggatttgcagctgtactactgtcagagctgctgttattgaaaagtGAATCCTGAAAATTCACcagcacacaaacaaaaacctaACCCTTTGTGTGTAAAGATTTAACTCTCACATCCTGATGCAACCCTACATGATGCCTTGTTAGAGGAAGATAGACAAATTAAACTCCCAGGAGCCATCACTCTCTTGTCTACAAACCTTTTTCATTAGTTTCTCTCTAACTACTGAATAAATCAGTGTAGATGCCAAGGAATTAGAAATGTTAAAGTAAAAGAAtagaaaacaatgaaaatttGCATAGAATGTAATCAAACCATGAACAAAATCACTTCAAACTGGTCCagagtgaaaacattttttttaaagtgcttaaCTGGTTAATAACGTCATTTTTCCATTCTAGTATGATTTCAAGAAAGTATAGAGTAAATTCCTGTCCAGAATTCCACACTTGTTGCACGCTGAGTCACAGGAAGATATGACGTTGGATAGCTGCATTTTAGAAGATGGAACATTGGCAGgaaatctgtattttaaaaaaaaggaatttttatAAAGTTTCTGCAAGCATCAAGTTACACTGCAAATTAGAAGGATGCTCTGAGGAAATATCAGGCAATCGTGGTAGTAATCTGCAGCATCTGAGCAAAGTAATCATCCTTCACTTTAGGCAGAAGTCTGCAAAAGATCAACTATTGTTAGCGCTAGTTAAGAGGGTGACAAATGACTCTTGATCACAGGTAAAGAAGGATATTAAtcgttgttttatttctttctgatGGTTTCCACAAGGGGGCCTAGAACCCTGGAGCAGGagcattaaaatatcatttctgtTCAGAAAGAaccataatgaaaaataaatcatctcTAATTCCTGGTTGATACTGATAATACACTTCaagataaataactaaataataacatatGACTTTAAGTGGTTAAGCCTATAGATGAAAGACTCATTGTCAATGCTAGTTGTTTAAATATGTTAGTGAGCAAGAACTAAATTGTTACAAACATTTCTCCATTTACATGTCCCTTTtcattatttccagttttaaatgagCCCATTGCTTATACATGCcaaaaaaggataaaatatacattttgactggcagtgtaaaTGAGCTTTCCTATTGACAGCCATTTGTACAAACCAAcatcattttgtttacaatgtttacaatattatattttctaaCAATCTGAAATTTGACTTTTGGCTTGTATTCTGGTTTTAGCATTGAATTCATCTCCATGTAAACATTCGAGTACAGATTCCTCTGTATTAAGTGCCTGTTCATAGTATTAATCATGTATCCTAAATTCATTCTAACTAATTCTGTAGATGAGTATAGTTTGTAAGAGTGCTTTATCTCAAACATAAAGCAGTGGTTGCTATGATTTGTTTATATGAGATGTTGGCAGTTTCATTAAGGGTGAAACTTTCCATTTTGACCGTCCaaattatttattgtgtttcaTTCCTGGTGTCTTTATAATATAATGGTTCTGTGCTTATATTGTACAATacctacataaacataaacagaagtTTCTCAAATTATGAATACGTATTGTGATTAGCTTGCTGTTGTACATGCCAGCTGATGTTCTTCATGTTTATAAAAACCCAATCAAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU170834 True 3030 lncRNA 0.34 2 6628351 6684107

Neighbor

gene id symbol gene type direction distance location
proza proza,LOC108275052,LOC108438900,LOC107576663 coding upstream 212965 6404746 ~ 6415386 (+)
ndufb9 ndufb9 coding upstream 325786 6297766 ~ 6302565 (+)
syngap1a syngap1a,LOC108275193,LOC108439800 coding upstream 380646 6120616 ~ 6247705 (+)
scn1bb LOC108274487,LOC107669127 coding upstream 510814 6108863 ~ 6117537 (+)
lingo4a LOC108274662 coding upstream 542272 6077917 ~ 6086079 (+)
LOC113547131 LOC108274606,LOC108435620 coding downstream 8686 6692793 ~ 6733914 (+)
LOC113529730 herpud2,LOC108275212,LOC105897640,LOC107686057 coding downstream 569213 7253320 ~ 7264696 (+)
LOC113529540 cfap69 coding downstream 697971 7382078 ~ 7400425 (+)
sfxn1 LOC108275306,LOC108435595,LOC107668583,LOC107749734,LOC107594876,LOC107594919 coding downstream 717390 7401497 ~ 7418528 (+)
LOC113529491 LOC108275229,LOC103023804,LOC103475354 coding downstream 738762 7422869 ~ 7434230 (+)
G144221 NA non-coding upstream 83435 6544372 ~ 6544916 (+)
LOC113547099 NA non-coding upstream 199917 6422136 ~ 6428434 (+)
G143987 NA non-coding upstream 270431 6356317 ~ 6357920 (+)
G143832 snrpg,LOC107671841,LOC107594056,LOC107598637 non-coding upstream 643973 5978102 ~ 5984378 (+)
G143772 LOC108274654,LOC104947748,LOC106517727,LOC106603477 non-coding upstream 692022 5932581 ~ 5936329 (+)
G144359 NA non-coding downstream 123864 6807971 ~ 6826908 (+)
LOC117598166 NA non-coding downstream 129187 6813294 ~ 6815936 (+)
G144361 NA non-coding downstream 140294 6824401 ~ 6911988 (+)
LOC113529732 NA non-coding downstream 146485 6830592 ~ 6834449 (+)
LOC117598033 NA non-coding downstream 152948 6837055 ~ 6839420 (+)
LOC113547098 deptor,LOC108274614,LOC108442483,LOC107685573 other upstream 34746 6587211 ~ 6593605 (+)
gpx3 gpx3 other upstream 880407 5740907 ~ 5747944 (+)
fhl3b fhl3,LOC108438237,LOC107734040,LOC107551770,LOC107681628 other upstream 2119103 4484833 ~ 4509248 (+)
G142576 NA other upstream 3166180 3397670 ~ 3462171 (+)
LOC113523845 NA other upstream 3232284 3384180 ~ 3396067 (+)
G144353 NA other downstream 95882 6779989 ~ 6919661 (+)
LOC113547145 NA other downstream 99409 6783516 ~ 6785437 (+)
LOC117598156 NA other downstream 112865 6796972 ~ 6798904 (+)
trnaw-cca_10 NA other downstream 266965 6951072 ~ 6951422 (+)
trnaw-cca_11 NA other downstream 268695 6952802 ~ 6952873 (+)

Expression


Co-expression Network