trnaw-cca_10


Basic Information

Item Value
gene id trnaw-cca_10
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 6951072 ~ 6951422 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU171012
GCGCGTCTGACTCCAGATCAGAAGGTTGCGTGTTCAAATCACGTCggggtcagagctgtttatttctctgtttgGGGGCGGATCCGGCTTATAATTGCGATCAAAACAATAAATCTGTAACGTCAGCACATTATGATAGTTTCTACATGTAAGATCAGCAAACTGAGCTTTATTCTGGGAGAATAAACCCATGAGCCACTCGAGGGCATATTTTACAGGGATTTAATCATGGCTAAGGTTGTTCTTAGGCAGAATGATGAGACGAGGCTGAAGTTGGCTTCCTAGGATCTCGCATGAAGTGCGTTAAAATCACACACGGTTTTAGTGAATG
>trnaw-cca_10
GACCTCGTGGCGCAACGGTAGCGCGTCTGACTCCAGATCAGAAGGTTGCGTGTTCAAATCACGTCggggtca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU171012 True 331 lncRNA 0.44 1 6951092 6951422
trnaw-cca_10 False 72 tRNA 0.44 1 6951072 6951143

Neighbor

gene id symbol gene type direction distance location
LOC113547131 LOC108274606,LOC108435620 coding upstream 217158 6692793 ~ 6733914 (+)
LOC117598051 LOC108274605 coding upstream 270903 6679484 ~ 6680169 (+)
LOC113547127 LOC108274605,LOC108435589 coding upstream 271746 6605821 ~ 6679326 (+)
proza proza,LOC108275052,LOC108438900,LOC107576663 coding upstream 535686 6404746 ~ 6415386 (+)
ndufb9 ndufb9 coding upstream 648507 6297766 ~ 6302565 (+)
LOC113529730 herpud2,LOC108275212,LOC105897640,LOC107686057 coding downstream 301898 7253320 ~ 7264696 (+)
LOC113529540 cfap69 coding downstream 430656 7382078 ~ 7400425 (+)
sfxn1 LOC108275306,LOC108435595,LOC107668583,LOC107749734,LOC107594876,LOC107594919 coding downstream 450075 7401497 ~ 7418528 (+)
LOC113529491 LOC108275229,LOC103023804,LOC103475354 coding downstream 471447 7422869 ~ 7434230 (+)
ccng1 ccng1,LOC107745080 coding downstream 488273 7439695 ~ 7444266 (+)
G144376 NA non-coding upstream 8777 6940701 ~ 6942295 (+)
G144382 NA non-coding upstream 17771 6932580 ~ 6933301 (+)
G144361 NA non-coding upstream 39084 6824401 ~ 6911988 (+)
LOC117598150 NA non-coding upstream 42496 6907189 ~ 6908576 (+)
LOC117598165 NA non-coding upstream 51280 6871132 ~ 6899792 (+)
G144442 NA non-coding downstream 6215 6957637 ~ 6958164 (+)
G144444 NA non-coding downstream 7178 6958600 ~ 6961938 (+)
LOC113530161 NA non-coding downstream 181428 7132850 ~ 7139372 (+)
trnag-ccc_3 NA non-coding downstream 274056 7225478 ~ 7225548 (+)
G144486 NA non-coding downstream 287581 7239003 ~ 7266915 (+)
G144353 NA other upstream 31411 6779989 ~ 6919661 (+)
LOC117598156 NA other upstream 152168 6796972 ~ 6798904 (+)
LOC113547145 NA other upstream 165635 6783516 ~ 6785437 (+)
LOC113547098 deptor,LOC108274614,LOC108442483,LOC107685573 other upstream 357467 6587211 ~ 6593605 (+)
gpx3 gpx3 other upstream 1203128 5740907 ~ 5747944 (+)
trnaw-cca_11 NA other downstream 1380 6952802 ~ 6952873 (+)
trnaw-cca_12 NA other downstream 5023 6956445 ~ 6956516 (+)
gabra6a gabra6,LOC108275227,LOC107554706,LOC107684829 other downstream 496448 7447870 ~ 7466552 (+)
G145233 LOC107676291 other downstream 1890054 8841476 ~ 8842266 (+)
si:ch73-233f7.1 si:ch73-233f7.1,LOC108274507,LOC107660897,LOC107588310,LOC107596359,LOC107754489,LOC108430952 other downstream 3585829 10537251 ~ 10547929 (+)

Expression


Co-expression Network