G144444


Basic Information

Item Value
gene id G144444
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 6958600 ~ 6961938 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU171076
TTTAATATGGATATCCCTAATGatcacagaacatttttttaggAGTGTATTTGAACAGCTCCTAAAAATAAAGGTGCCAGAAACGGTTCTTTAGAGCGATGCCACAGAAGAACCATTTTTGGTTCCATATAGAACTTTTCGGCCCATGATTCCTCTTTGGCTGTATTTACTGCTGCCACAATAAACTGAATAATCATTTTCAACCACAAAGATCCATCCAATAATCCACTAATATTTATGGAGAGAATATTTTGAAGCCCCTGTGGTTAAAGATCCATAACTCAATTtaacttaattaaattaaattatccctaaatattttagaaaatattgtgacaTACATTGTCACAAACCTTTCTAAGACaatatgcttttaaaaaacattattttatgggtattttttaaaatgataattataacCTCTGAGGTTAAAACTTAAATCTTTAAATTACTAATATCTATCTAGTTAGCTATCTTCAAATATTTCCCCTCCCTTTCTGTGATCATTTTTGTAGAAATGAAATAATACATGCAGCACTACTGTTTCACTACAAGTTTCTTAACAAAcctacagttggggtcataagtttacatatgccttgaagaatctgcaaaatgttaaaaattaaaaagagggATGATAattgcattttgtgttttatttagtgCTGCCCTAAATAAGCTATATCACGTAGCGGATGTTTCCacatagtccacaagacacaataataactgaaattacacaaatgaacaaGTTCAAAAGCACTTGATTCTttatactgtgttgttacctggatgaccaacgactgtttttatctTTTGTGATAGTTCTTCACGAgttccttgtttgtcctgagaagttaaactgcccactgttcttcagaaaaatcctccatcctgcacattctttggttttccagcatcttctgcatattgaCCCCTTTCCTACAGAGactatatgattttgagatccatcttttcacactgaggatatctgagggactcatacacaactattacaaaagatgcacacattcactgatgctcaagaaggcaacatactacattaagagccaggggggttCTTCctttgctccatggtccagttctgatgctaacgtgcccattgtaggagctttcggtggtggaTAGGGGTCAGCATGGTCATTCTGacaggtctgcagctacacagccccatacacagcaatgcatgcactgtgtgttctgacacctttctatcacagccagcattcactttttcagcaatttgtgctacagtagctcttctgtgggatcggatcagatgggctagccttcactccccacatgcatcagtgagccttgggcacccaccCTATCGCGGTTCAGCGAttttccttccttggaccacttttggtcgggactaatcactgcataccaggaacaccccacaagacctgctgttttggagatactctgacccagtcatctagcagtcacaatttggcccttgtcagagtcactcagatccttacgcttgcccatttttcctgcttctaacacatcaactttgagaactgactgttcacttgctgcccaatatatcccaccccttgacaggcaccattgtaatgagataaatgttatacacttcacctgtcagtggtgttaatgttatggctgattgggatttgtgtgtgtagagattCGTTCATAAAGCTCTAAAGCACAAACTTTGATTTCATGGAGACTTCAAACATTCAACCTtcatgtattaatttttttaataaaactatgtAGAGgacatctgtaaaaaaaaaacctgactaaCCAAAAACACCAAAAGGCCATTGAGCTCATCAACGTACCTGAAGTAACGCTCCTCTTCAGCTGCCTCTTTCTTCCCGAAGGCTCCGCCGGCTTCTCTGATAGagcctccacctcctccacctttACCTGCACCTTTCCCCAATTCACCAAGCTGTCCGAACCCATGCGGATCTGAGTAGTGAAATAACTCCGTAAAAAGCTGCTTCTGAACAGCCGCGCCATGGCTCCCAATCAGAGAACTTTCTGTAACGAATTCAGTGCCCTTGTGTCTCCGGTCTAAACACGGAAGTGCTCGACTCCCTCTATGAACTTTGGCAGGCGGCGAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU171076 True 2135 lncRNA 0.40 2 6958600 6961938

Neighbor

gene id symbol gene type direction distance location
LOC113547131 LOC108274606,LOC108435620 coding upstream 224686 6692793 ~ 6733914 (+)
LOC117598051 LOC108274605 coding upstream 278431 6679484 ~ 6680169 (+)
LOC113547127 LOC108274605,LOC108435589 coding upstream 279274 6605821 ~ 6679326 (+)
proza proza,LOC108275052,LOC108438900,LOC107576663 coding upstream 543214 6404746 ~ 6415386 (+)
ndufb9 ndufb9 coding upstream 656035 6297766 ~ 6302565 (+)
LOC113529730 herpud2,LOC108275212,LOC105897640,LOC107686057 coding downstream 291382 7253320 ~ 7264696 (+)
LOC113529540 cfap69 coding downstream 420140 7382078 ~ 7400425 (+)
sfxn1 LOC108275306,LOC108435595,LOC107668583,LOC107749734,LOC107594876,LOC107594919 coding downstream 439559 7401497 ~ 7418528 (+)
LOC113529491 LOC108275229,LOC103023804,LOC103475354 coding downstream 460931 7422869 ~ 7434230 (+)
ccng1 ccng1,LOC107745080 coding downstream 477757 7439695 ~ 7444266 (+)
G144442 NA non-coding upstream 436 6957637 ~ 6958164 (+)
G144376 NA non-coding upstream 16305 6940701 ~ 6942295 (+)
G144382 NA non-coding upstream 25299 6932580 ~ 6933301 (+)
LOC117598150 NA non-coding upstream 50024 6907189 ~ 6908576 (+)
LOC113529731 NA non-coding upstream 76436 6880657 ~ 6882164 (+)
LOC113530161 NA non-coding downstream 170912 7132850 ~ 7139372 (+)
trnag-ccc_3 NA non-coding downstream 263540 7225478 ~ 7225548 (+)
G144486 NA non-coding downstream 277065 7239003 ~ 7266915 (+)
G144523 NA non-coding downstream 456823 7418761 ~ 7420820 (+)
G144568 NA non-coding downstream 613170 7575108 ~ 7575491 (+)
trnaw-cca_12 NA other upstream 2084 6956445 ~ 6956516 (+)
trnaw-cca_11 NA other upstream 5727 6952802 ~ 6952873 (+)
trnaw-cca_10 NA other upstream 7178 6951072 ~ 6951422 (+)
LOC117598156 NA other upstream 159696 6796972 ~ 6798904 (+)
LOC113547145 NA other upstream 173163 6783516 ~ 6785437 (+)
gabra6a gabra6,LOC108275227,LOC107554706,LOC107684829 other downstream 485932 7447870 ~ 7466552 (+)
G145233 LOC107676291 other downstream 1879538 8841476 ~ 8842266 (+)
si:ch73-233f7.1 si:ch73-233f7.1,LOC108274507,LOC107660897,LOC107588310,LOC107596359,LOC107754489,LOC108430952 other downstream 3575313 10537251 ~ 10547929 (+)
LOC113529865 LOC108275059,LOC107660898,LOC106604817 other downstream 3592428 10554366 ~ 10595601 (+)
hrh2a LOC108274475 other downstream 4333190 11295128 ~ 11306318 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
tiger barb (Puntius tetrazona) G135527 LOC107731523,LOC107660498,LOC107575177,LOC107657216,LOC107549340,LOC107730404 misc NC_056718.1 CM032087.1 2005549 ~ 2013527 (-)