LOC113530161


Basic Information

Item Value
gene id LOC113530161
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 7132850 ~ 7139372 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU171111
GTTTTGTCTTTCTTCTTGATTAGTGTCCTCGGTTTACGTTCTGAGAGTcctttatttcttcattaagCTTCTGTTATCATCTGTGTGCTTCATTCTGTGTTAAAGGCAACACACTCCATCTGGGATGATTTCGTCAGAAAGTTCTGGAAAGCAAGGCAGGCGTGCAAATAGCCAGGGGAGTGACACAAGGAAGGACAGAGGAAAAACTTGTGGCACAATGGTGATTTTCTCATCTATATCTAAATAATGAAgaaaaaccgAAGCAAATTCCTCCTCAACTCTGAGTTCGGCAAGTGACGTCAAGtcagcatggctgctcacagcatgaacagtaaacacagcagcacttcttacctttaaatgatttatactggatatacaagtatttgctgtGGAGAAAtcaacatacaaacatattatttttattttattttcctaaatttttatatttctatatttatgctCATAGTTGTTTGGCttattaatattctttttatttcttgtatttttactgttatactatgcaccagtacaccaagacaaattccttgtacatgtaaacccagGATACATGGCAATaaaagtgattctgattctga
>XR_003403117.2
GTTTTGTCTTTCTTCTTGATTAGTGTCCTCGGTTTACGTTCTGAGAGTcctttatttcttcattaagCTTCTGTTATCATCTGTGTGCTTCATTCTGTGTTAAAGGCAACACACTCCATCTGGGATGATTTCGTCAGAAAGTTCTGGAAAGCAAGGCAGGCGTGCAAATAGCCAGGGGAGTGACACAAGGAAGGACAGAGGAAAAACTTGTGGCACAATGGTGATTTTCTCATCTATATCTAAATAATGAAgaaaaaccgAAGCAAATTCCTCCTCAACTCTGAGTTCGGCAAGTGACGTCAAGtcagcatggctgctcacagcatgaacaGTACACCTTGACATCATTCTGGGGTGTCATCCTGCTGAGGAAGGAAGAGGGAGCTTATTGGTGGTTAATATTGGGAATCTATTGATGTTCCTCCTGCTGTTTGGCCAAGGACTGGACCACTTGTTGGACTGGAACTCAGCTTCATTCTCCATGCCTGCCTCACATTGTTCTCCAAGCAGGTCCTGGGTTTCAGCACCAGATCACGTTTGTCCTTTTCAGAAATGTCTTCTTTGTTACGGATGGTCTTGTCCATATCTGATAGTATTAATGGACCTAACTAAGAAAACAAATCTAAAATCAGCACTGCCAGAACATTCATGTATAATTAGTCTTCCTCATTTCATTAAACAAGCTTTTATTCTATTAAAGCGCCTCTTCAGGCCTCGCTTTTTCTTAATTGAACATTCCAGTTTATGCATTAAGGGCAATAAATGCATTTGCATGTgttaatattgcattaacctGCACTAAAAATTGTTAGTATTACATAGACAGTGGATATGAAAAAATACTGCTCTGATAAGACCAGGTTTGTTTGTCTCTCAGACAATTCTCAAAAATGTAACCAGTCA
>XR_004578812.1
GTTTTGTCTTTCTTCTTGATTAGTGTCCTCGGTTTACGTTCTGAGAGTcctttatttcttcattaagCTTCTGTTATCATCTGTGTGCTTCATTCTGTGTTAAAGGCAACACACTCCATCTGGGATGATTTCGTCAGAAAGTTCTGGAAAGCAAGGCAGGCGTGCAAATAGCCAGGGGAGTGACACAAGGAAGGACAGAGGAAAAACTTGTGGCACAATGGTGATTTTCTCATCTATATCTAAATAATGAAgaaaaaccgAAGCAAATTCCTCCTCAACTCTGAGTTCGGCAAGTGACGTCAAGtcagcatggctgctcacagcatgaacagtaaacacagcagcacttcttacctttaaatgatttatactggatatacaagtatttgctgtGGAGAA

Function

GO:

id name namespace
GO:0048477 oogenesis biological_process
GO:0007292 female gamete generation biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU171111 False 599 lncRNA 0.36 4 7132850 7136915
XR_003403117.2 True 903 lncRNA 0.40 5 7132850 7139372
XR_004578812.1 False 399 lncRNA 0.41 4 7132850 7136715

Neighbor

gene id symbol gene type direction distance location
LOC113547131 LOC108274606,LOC108435620 coding upstream 398936 6692793 ~ 6733914 (+)
LOC117598051 LOC108274605 coding upstream 452681 6679484 ~ 6680169 (+)
LOC113547127 LOC108274605,LOC108435589 coding upstream 453524 6605821 ~ 6679326 (+)
proza proza,LOC108275052,LOC108438900,LOC107576663 coding upstream 717464 6404746 ~ 6415386 (+)
ndufb9 ndufb9 coding upstream 830285 6297766 ~ 6302565 (+)
LOC113529730 herpud2,LOC108275212,LOC105897640,LOC107686057 coding downstream 113948 7253320 ~ 7264696 (+)
LOC113529540 cfap69 coding downstream 242706 7382078 ~ 7400425 (+)
sfxn1 LOC108275306,LOC108435595,LOC107668583,LOC107749734,LOC107594876,LOC107594919 coding downstream 262125 7401497 ~ 7418528 (+)
LOC113529491 LOC108275229,LOC103023804,LOC103475354 coding downstream 283497 7422869 ~ 7434230 (+)
ccng1 ccng1,LOC107745080 coding downstream 300323 7439695 ~ 7444266 (+)
G144444 NA non-coding upstream 170912 6958600 ~ 6961938 (+)
G144442 NA non-coding upstream 174686 6957637 ~ 6958164 (+)
G144376 NA non-coding upstream 190555 6940701 ~ 6942295 (+)
G144382 NA non-coding upstream 199549 6932580 ~ 6933301 (+)
LOC117598150 NA non-coding upstream 224274 6907189 ~ 6908576 (+)
trnag-ccc_3 NA non-coding downstream 86106 7225478 ~ 7225548 (+)
G144486 NA non-coding downstream 99631 7239003 ~ 7266915 (+)
G144523 NA non-coding downstream 279389 7418761 ~ 7420820 (+)
G144568 NA non-coding downstream 435736 7575108 ~ 7575491 (+)
G144661 NA non-coding downstream 436688 7576060 ~ 7576788 (+)
trnaw-cca_12 NA other upstream 176334 6956445 ~ 6956516 (+)
trnaw-cca_11 NA other upstream 179977 6952802 ~ 6952873 (+)
trnaw-cca_10 NA other upstream 181428 6951072 ~ 6951422 (+)
LOC117598156 NA other upstream 333946 6796972 ~ 6798904 (+)
LOC113547145 NA other upstream 347413 6783516 ~ 6785437 (+)
gabra6a gabra6,LOC108275227,LOC107554706,LOC107684829 other downstream 308498 7447870 ~ 7466552 (+)
G145233 LOC107676291 other downstream 1702104 8841476 ~ 8842266 (+)
si:ch73-233f7.1 si:ch73-233f7.1,LOC108274507,LOC107660897,LOC107588310,LOC107596359,LOC107754489,LOC108430952 other downstream 3397879 10537251 ~ 10547929 (+)
LOC113529865 LOC108275059,LOC107660898,LOC106604817 other downstream 3414994 10554366 ~ 10595601 (+)
hrh2a LOC108274475 other downstream 4155756 11295128 ~ 11306318 (+)

Expression


Co-expression Network