G144486


Basic Information

Item Value
gene id G144486
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 7239003 ~ 7266915 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU171130
tgtttttatatatatatatatatatatatatatatatatatatatgagagagagagagagagagagagagtaaactGCTGAGAGTGggtaaattttaataaaatgttaaacataacTTCATGTGTTCAAATATGTGAtcaaaaactttaaataaatgtatacaagAGCTTTATTAATACTATAGACTGATGACAAATCATctagattcatttttattaaatcctttattatatatattttccttttttttaagtatcaCTATAAATAGGCAATAACTTAACAGAGTTGTGTTTACTTGCAGTCCAACACTTCTATAGTTTTCCTCCATATTGTAACTATCTGTGAATTAGGGCTGctaatgattattaaaataatctatagtttttttttgttgggattttttttattaatcagtagggatattaaaataaaaaaaaattcatttcaatgAGCTAATACTACTATAGAACTTTTAACATggcttaattaaataacaggtCACTAACTGCATTATAATATTACTGACATTCATCAGATAATCTGTTACAGCATGAGAATATTATCAAGCGCTTATGTCGACCACCCAGCTAACATAACATAACGTTTTTTACTGGTtccatacacattttttttagcaacTATACATCAGTGTAAAAATGGACCAATGGTTTGAATCATTGCGACTGGGTCTTACCTGTAGTTCAGGTCATGATTTGTTCAGTTCTGACAGTAATAAACACTCTGATGCTAAATTCACTATGCTTGCTCTACTTGCGTGAGGTGAATCATTTTCGGTATGTGGAATCGACTCAAATTTGACTCTTCGTTTTCAATGCCTGGAATTAAGGATTCAGGGAATCGACTCTTTTTTTGGGATCGACACCCTGCACTTTTGACATGAACCGAAATCAGGATGGCGACTTGATGATGAAACGTAACAGCATCTGTGTGACGTAGCACAGCGTGTTTCATAATGAAATTCATTGCCAACTATTATTGTTACTCGATTCGATCGATTTTGCTGATTAGTTGTTGAATTCAGTGATTAAGGCATTAAAGCCTGCTGTGAGACTGCACCTACATGAATAAAATGCAGAATATTGTAAACTAAATTTAAGTAAGAAAAAAGTCCTGTGACAACAAGAAGAATGTACTAGATGAAATGATAAAGTGTCCCCTGTGcatgaactgaaataaaaaaactgaataaaaagattaataaagAAGTCATTACAGTATTTCCTGTGTGTTCAGAGTTTGGTGAGTGTGTTCCTGCACACACTGTGCCCTCCTCCATGGCTGCTCTCTCTCAGTCCTCCAGTCCAGCAGTGGGCGCCGCTGACTCAAGCCCAGGATCGAGTTGCTGATTATGAGCTGCTTCGCTCCAGCGGTGGAGTAGGCGTGGCTCCAAAAATGAAGGAATAAACTCTGCCCTAGAGCGCTGTCTCTACGTTCGACTCGTCCTGTCCACCCCGGACTGCTTCCATGTTCAGTCTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU171130 True 1498 lncRNA 0.35 2 7239003 7266915

Neighbor

gene id symbol gene type direction distance location
LOC113547131 LOC108274606,LOC108435620 coding upstream 505089 6692793 ~ 6733914 (+)
LOC117598051 LOC108274605 coding upstream 558834 6679484 ~ 6680169 (+)
LOC113547127 LOC108274605,LOC108435589 coding upstream 559677 6605821 ~ 6679326 (+)
proza proza,LOC108275052,LOC108438900,LOC107576663 coding upstream 823617 6404746 ~ 6415386 (+)
ndufb9 ndufb9 coding upstream 936438 6297766 ~ 6302565 (+)
LOC113529540 cfap69 coding downstream 115163 7382078 ~ 7400425 (+)
sfxn1 LOC108275306,LOC108435595,LOC107668583,LOC107749734,LOC107594876,LOC107594919 coding downstream 134582 7401497 ~ 7418528 (+)
LOC113529491 LOC108275229,LOC103023804,LOC103475354 coding downstream 155954 7422869 ~ 7434230 (+)
ccng1 ccng1,LOC107745080 coding downstream 172780 7439695 ~ 7444266 (+)
gabrb2a gabrb2,LOC107554707,LOC107684828 coding downstream 200857 7467772 ~ 7525350 (+)
trnag-ccc_3 NA non-coding upstream 13455 7225478 ~ 7225548 (+)
LOC113530161 NA non-coding upstream 99631 7132850 ~ 7139372 (+)
G144444 NA non-coding upstream 277065 6958600 ~ 6961938 (+)
G144442 NA non-coding upstream 280839 6957637 ~ 6958164 (+)
G144376 NA non-coding upstream 296708 6940701 ~ 6942295 (+)
G144523 NA non-coding downstream 151846 7418761 ~ 7420820 (+)
G144568 NA non-coding downstream 308193 7575108 ~ 7575491 (+)
G144661 NA non-coding downstream 309145 7576060 ~ 7576788 (+)
G144665 NA non-coding downstream 311213 7578128 ~ 7578377 (+)
G144715 NA non-coding downstream 418833 7685748 ~ 7688153 (+)
trnaw-cca_12 NA other upstream 282487 6956445 ~ 6956516 (+)
trnaw-cca_11 NA other upstream 286130 6952802 ~ 6952873 (+)
trnaw-cca_10 NA other upstream 287581 6951072 ~ 6951422 (+)
LOC117598156 NA other upstream 440099 6796972 ~ 6798904 (+)
LOC113547145 NA other upstream 453566 6783516 ~ 6785437 (+)
gabra6a gabra6,LOC108275227,LOC107554706,LOC107684829 other downstream 180955 7447870 ~ 7466552 (+)
G145233 LOC107676291 other downstream 1574561 8841476 ~ 8842266 (+)
si:ch73-233f7.1 si:ch73-233f7.1,LOC108274507,LOC107660897,LOC107588310,LOC107596359,LOC107754489,LOC108430952 other downstream 3270336 10537251 ~ 10547929 (+)
LOC113529865 LOC108275059,LOC107660898,LOC106604817 other downstream 3287451 10554366 ~ 10595601 (+)
hrh2a LOC108274475 other downstream 4028213 11295128 ~ 11306318 (+)

Expression


Co-expression Network