gabra6a (gabra6,LOC108275227,LOC107554706,LOC107684829)


Basic Information

Item Value
gene id gabra6a
gene name gabra6,LOC108275227,LOC107554706,LOC107684829
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 7447870 ~ 7466552 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU171231
cACACAACAAGAAACAGTCTCTCGTACCCAAGTCATGGAGTTTCTCTCGTTACTGAAAGAAACACCAGTTAGCACTTAAAGACTCCTGGACAAAATGGACAGAATAttaggtttattatttttaaccagTATTGGGAATGTAATAGGAAACCACCATGAGAAGATAAGTCCAGAAAACATCACCCTGATTCTGGATCAGCTTCTTGAGGGC
>XM_026919624.2
GAAACAGTCTCTCGTACCCAAGTCATGGAGTTTCTCTCGTTACTGAAAGAAACACCAGTTAGCACTTAAAGACTCCTGGACAAAATGGACAGAATAttaggtttattatttttaaccagTATTGGGAATGTAATAGGAAACCACCATGAGAAGATAAGTCCAGAAAACATCACCCTGATTCTGGATCAGCTTCTTGAGGGCTACGACAACCGACTGAGGCCTGGATCAGGagGTTCTGTCACTGAAGTCAAAACAGATATATTTGTCACCAGTTTTGGACCCGTGTCAGATGttgaaatgGAATTCACCATGGACATGTTTTTCCGTCAAATGTGGGTGGACGAGAGGCTGGCGTTTAACGGTCCCATCGAGATCCTGCGCTTAAACAATCGCATGGTGGACAAGATTTGGACTCCAGACACCTTTTTTCACAACTCGAAGAAATCCCTGGCTCACAACATGACAACACCTAACAAGCTCTTCCGCATCATGCAGAACGGCACGGTCTTCTACACCATGAGGCTGACTGTGAACGCAGAGTGTCCCATGATGCTGACGGACTTTCCCATGGATGGCCATATTTGTCCTCTACGCTTCGGAAGCTATGCCTACACCAGCAGTGAGATTGTTTACACATGGAGGAAAGGCCTGGAGCAGTCTGTGGTCATCCCTCCAGAGTCCTCCAACTTACTGCAGTACGACCTCATCGGACAGACGCTCTTCAGCAAAATACTGAAGATCAATACAGGCCAATATTCTGTCAAGATGGTTCATTTCTTCCTCCAGAGGAAGCTCGGCTATCATCTGATCCAAACGTATATCCCCCTCATCATGGTGGTTGTCCTGTCCCAAGTGTCATTCTGGATCAATAAGGAGTCCGTGCCTGCTCGCACAGTGGCTGGAGCGACCACTGTCCTCACCATGACCACACTGAGCATCAGCGCACGCTCTTCCCTGCCCAAAGTGCCCTATGCCACAGCCATGGACTGGTTCATTGCCGTCTGCTTCGCCTTTGTGGCCTCGGCCCTGGTCGAGTTTGCTGCTGTCAACTACTTTGCCACGCTGGAGGCCAACAAGATGAGACGTCGACTCTCCAGAGCTTCTGTGCTGGAGTCTATCGCTGAGGGGAGTGACGATGAAGATGAGTCGACGATATCTGACACAAGCACTGGAGAGCGACAAAGAAGGAGGATGAACTCAGTTTCAGAAGCTCCAAAAATGCGCCTGCCCATCTTCCTGCAGCAGGGTTCAGCCATCCCGCCCAACATTACGCTGGCTGGCCCCAGTGTCATTGACCAGTACGCTCGCATGCTCTTCCCACTCGCATTCGCCCTCTTTAACATCATCTACTGGTACATCTACCTCAGCAAGGATACCATGGAGAAATCGAGGGAGATGGACTGAGTTTCtccagtgtgcagtgtgcagaagAATATCTACTGCTCTCCTTTCGCTCGCTCTCCCTTTGTTCTTGGActgtttcagtctctctcttcctctctcctctgcTGTCTCTGACTCCTGAGGTCTGATGAGGTCTGATGGAGCACAGGCCCATGTGACAGCTTGACAAGCGCGTGTATTCTGTCACCCATATGGGTCTGTGATCACACCCATGCCCCATGTTCCTCTCTGCTGTACCTTAACCCTGTGCATGGAAAATGTGCCCTGCTTCTGTGGCTGAGTGAGTAAGAAAAACATTGATGATCTAATCCTCAGCCCTAATTGGTGATGCAACATTGAACCAGTGCTTTCAGATACCTCTCTAGAGAGCCAGACCTCAGAGCACTGGATGAAGAAAAATGGCAAGGGTTCATATTCTTCAGGAGCTTCAAAGGTTTCTCCATCCTGCACAGAAAACTCAAAATctcaaagacagagaaagacagagagagagagagagagagagagagagaaagagagagagacacacacatgattCTCTCATGTCCTAATTCCACAACACGTTTGTCTAAGTAGCAGTAAAGATTCTGGGTTTGAGGATTTATTTGTGTTCTTGTGGATTCTTGTGGatttattaaaggtgcagttggtcagttttttaaatgtgcttctagacctgtaataatcatatcattttagaaattaaaaaaaaaaatcagtgatttaGAATATCAACATGCAATGCATTTGGCTTGTCTCTTCATTTCAGAcatctttattatatttttctggccctgaaattagcttCAGCCTAAACAGACCAGTTCAGCTCTTCCTACGTTTTCCTAAATGGTAACTCACAAGGTCTCTGTAGTTTCATTAGAGAGTGTAAGGTAGGATGGGGTTAAGAAGAAAGGCTGTTTTGATTTAAATCATGTTCATCTTACAGGCAGCAGAGCGCTCTTAAATTACAAACTACTCctttaaagtatttattatttagaaaaaatggACTCTCTCTAATCTTTATCCATGGAATGTAGctttaaaacttattttatagAACATTTGAGgccacatttacattatttgtacCTCAGGGAGCAAAAAATACTGTTCAGTACCCTTTTTTCTGTTATGGAAAAATCAAGTGAGACCTACTTAAAATTGGAACAAACTGACCCACTGTATAATACAGTGgacaaaatacattatttaaagtatttgtatgtacactgtgtactatatgcaCTCCTGATAAACACTGAAGATCAGAACACATCCTACAGTCCTGCATAATATGAACAAATGTGTTCTAATTATTTATGGACTTACAATCAGTTTGCTTGTGGGATAAGATTCAGTCtgtcagattttaaaaacaaatctagTGACACCAAcatattttttgta

Function

symbol description
gabra6 Predicted to enable GABA-gated chloride ion channel activity; inhibitory extracellular ligand-gated ion channel activity; and transmitter-gated ion channel activity involved in regulation of postsynaptic membrane potential. Predicted to contribute to GABA-A receptor activity; benzodiazepine receptor activity; and chloride channel activity. Predicted to be involved in several processes, including GABAergic synaptic transmission; chloride transmembrane transport; and gamma-aminobutyric acid signaling pathway. Predicted to be located in plasma membrane. Predicted to be part of GABA-A receptor complex. Predicted to be active in several cellular components, including cerebellar Golgi cell to granule cell synapse; dendrite membrane; and hippocampal mossy fiber to CA3 synapse. Predicted to be integral component of postsynaptic specialization membrane.

NR:

description
PREDICTED: gamma-aminobutyric acid receptor subunit alpha-6

GO:

id name namespace
GO:0006811 ion transport biological_process
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004890 GABA-A receptor activity molecular_function
GO:0005230 extracellular ligand-gated ion channel activity molecular_function

KEGG:

id description
K05175 GABRA; gamma-aminobutyric acid receptor subunit alpha

RNA

RNA id representative length rna type GC content exon number start site end site
TU171231 False 211 lncRNA 0.40 2 7447870 7448531
XM_026919624.2 True 2817 mRNA 0.44 10 7447880 7466552

Neighbor

gene id symbol gene type direction distance location
ccng1 ccng1,LOC107745080 coding upstream 3604 7439695 ~ 7444266 (+)
LOC113529491 LOC108275229,LOC103023804,LOC103475354 coding upstream 13640 7422869 ~ 7434230 (+)
sfxn1 LOC108275306,LOC108435595,LOC107668583,LOC107749734,LOC107594876,LOC107594919 coding upstream 29342 7401497 ~ 7418528 (+)
LOC113529540 cfap69 coding upstream 47445 7382078 ~ 7400425 (+)
LOC113529730 herpud2,LOC108275212,LOC105897640,LOC107686057 coding upstream 183174 7253320 ~ 7264696 (+)
gabrb2a gabrb2,LOC107554707,LOC107684828 coding downstream 1220 7467772 ~ 7525350 (+)
atp10b atp10b coding downstream 69783 7536335 ~ 7574229 (+)
trnaa-agc_3 NA coding downstream 142489 7609041 ~ 7609113 (+)
trnaa-agc_4 NA coding downstream 145218 7611770 ~ 7611842 (+)
trnaa-agc_5 NA coding downstream 147953 7614505 ~ 7614577 (+)
G144523 NA non-coding upstream 27050 7418761 ~ 7420820 (+)
G144486 NA non-coding upstream 180955 7239003 ~ 7266915 (+)
trnag-ccc_3 NA non-coding upstream 222322 7225478 ~ 7225548 (+)
LOC113530161 NA non-coding upstream 308498 7132850 ~ 7139372 (+)
G144444 NA non-coding upstream 485932 6958600 ~ 6961938 (+)
G144568 NA non-coding downstream 108556 7575108 ~ 7575491 (+)
G144661 NA non-coding downstream 109508 7576060 ~ 7576788 (+)
G144665 NA non-coding downstream 111576 7578128 ~ 7578377 (+)
G144715 NA non-coding downstream 219196 7685748 ~ 7688153 (+)
G144726 NA non-coding downstream 237529 7704081 ~ 7704763 (+)
trnaw-cca_12 NA other upstream 491354 6956445 ~ 6956516 (+)
trnaw-cca_11 NA other upstream 494997 6952802 ~ 6952873 (+)
trnaw-cca_10 NA other upstream 496448 6951072 ~ 6951422 (+)
G144353 NA other upstream 528209 6779989 ~ 6919661 (+)
G145233 LOC107676291 other downstream 1374924 8841476 ~ 8842266 (+)
si:ch73-233f7.1 si:ch73-233f7.1,LOC108274507,LOC107660897,LOC107588310,LOC107596359,LOC107754489,LOC108430952 other downstream 3070699 10537251 ~ 10547929 (+)
LOC113529865 LOC108275059,LOC107660898,LOC106604817 other downstream 3087814 10554366 ~ 10595601 (+)
hrh2a LOC108274475 other downstream 3828576 11295128 ~ 11306318 (+)
atp6v0e1 va0e1,atp6v0e1,LOC106612155 other downstream 4128947 11595499 ~ 11597970 (+)

Expression


Co-expression Network