G144568


Basic Information

Item Value
gene id G144568
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 7575108 ~ 7575491 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU171240
tttttgcaataatttaattttcaataCATGAACTCAAGTAAtctgaaaatggaaaaacatcatGTCTGCATGAATCAGACAGTATACAGAtttctttctgaaatatttgtaCTGCTACAGTTATTTAAGAGCCTACTAGTGAATCTACCAAAGAAGAATGAGATGCCAGTTGCAAACTTcctgacacatttttttttccaacatcaGGACACTCTACTGGCCAATATTTGCTTGagtttgaaaaaaatgatgCCTTGTCAGCATTGTGCAAGTGCAGTGTTGTATTAAGTGTGTTGCATTTACTGCTTCTGGGAGATTTGGTTATGTTCGTGCACTTGAATAACCTAATTACAGGGCTTAAATCTAGGTGTCTATCAAATTTCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU171240 True 384 lncRNA 0.34 1 7575108 7575491

Neighbor

gene id symbol gene type direction distance location
atp10b atp10b coding upstream 879 7536335 ~ 7574229 (+)
gabrb2a gabrb2,LOC107554707,LOC107684828 coding upstream 49758 7467772 ~ 7525350 (+)
ccng1 ccng1,LOC107745080 coding upstream 130842 7439695 ~ 7444266 (+)
LOC113529491 LOC108275229,LOC103023804,LOC103475354 coding upstream 140878 7422869 ~ 7434230 (+)
sfxn1 LOC108275306,LOC108435595,LOC107668583,LOC107749734,LOC107594876,LOC107594919 coding upstream 156580 7401497 ~ 7418528 (+)
trnaa-agc_3 NA coding downstream 33550 7609041 ~ 7609113 (+)
trnaa-agc_4 NA coding downstream 36279 7611770 ~ 7611842 (+)
trnaa-agc_5 NA coding downstream 39014 7614505 ~ 7614577 (+)
trnaa-agc_6 NA coding downstream 44446 7619937 ~ 7620009 (+)
trnaa-agc_7 NA coding downstream 59007 7634498 ~ 7634570 (+)
G144523 NA non-coding upstream 154288 7418761 ~ 7420820 (+)
G144486 NA non-coding upstream 308193 7239003 ~ 7266915 (+)
trnag-ccc_3 NA non-coding upstream 349560 7225478 ~ 7225548 (+)
LOC113530161 NA non-coding upstream 435736 7132850 ~ 7139372 (+)
G144444 NA non-coding upstream 613170 6958600 ~ 6961938 (+)
G144661 NA non-coding downstream 569 7576060 ~ 7576788 (+)
G144665 NA non-coding downstream 2637 7578128 ~ 7578377 (+)
G144715 NA non-coding downstream 110257 7685748 ~ 7688153 (+)
G144726 NA non-coding downstream 128590 7704081 ~ 7704763 (+)
G144782 NA non-coding downstream 440169 8015660 ~ 8018082 (+)
gabra6a gabra6,LOC108275227,LOC107554706,LOC107684829 other upstream 108556 7447870 ~ 7466552 (+)
trnaw-cca_12 NA other upstream 618592 6956445 ~ 6956516 (+)
trnaw-cca_11 NA other upstream 622235 6952802 ~ 6952873 (+)
trnaw-cca_10 NA other upstream 623686 6951072 ~ 6951422 (+)
LOC117598156 NA other upstream 776204 6796972 ~ 6798904 (+)
G145233 LOC107676291 other downstream 1265985 8841476 ~ 8842266 (+)
si:ch73-233f7.1 si:ch73-233f7.1,LOC108274507,LOC107660897,LOC107588310,LOC107596359,LOC107754489,LOC108430952 other downstream 2961760 10537251 ~ 10547929 (+)
LOC113529865 LOC108275059,LOC107660898,LOC106604817 other downstream 2978875 10554366 ~ 10595601 (+)
hrh2a LOC108274475 other downstream 3719637 11295128 ~ 11306318 (+)
atp6v0e1 va0e1,atp6v0e1,LOC106612155 other downstream 4020008 11595499 ~ 11597970 (+)

Expression


Co-expression Network