G144665


Basic Information

Item Value
gene id G144665
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 7578128 ~ 7578377 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU171371
cCCGTTACTCACTAACCAGCTGTCATGAGTTCTATACAGAGCGAATAAATGCCTCACcttttaaatcagaaaaaagctaaaattctaTCCATCTTGAATCCTGAATCTCTCTCCCTTGATTGGCTGCTAGCTCTTATCTGTCTCCATGGAGTCTTCTTCCACACCTAAAATTGAGGCTTGATGACGTCTGAATACAAATTTCCAGACAATTCTGACCTGGATTGTCTGGGCAACTCATAGCAGctcagga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU171371 True 250 lncRNA 0.42 1 7578128 7578377

Neighbor

gene id symbol gene type direction distance location
atp10b atp10b coding upstream 3899 7536335 ~ 7574229 (+)
gabrb2a gabrb2,LOC107554707,LOC107684828 coding upstream 52778 7467772 ~ 7525350 (+)
ccng1 ccng1,LOC107745080 coding upstream 133862 7439695 ~ 7444266 (+)
LOC113529491 LOC108275229,LOC103023804,LOC103475354 coding upstream 143898 7422869 ~ 7434230 (+)
sfxn1 LOC108275306,LOC108435595,LOC107668583,LOC107749734,LOC107594876,LOC107594919 coding upstream 159600 7401497 ~ 7418528 (+)
trnaa-agc_3 NA coding downstream 30664 7609041 ~ 7609113 (+)
trnaa-agc_4 NA coding downstream 33393 7611770 ~ 7611842 (+)
trnaa-agc_5 NA coding downstream 36128 7614505 ~ 7614577 (+)
trnaa-agc_6 NA coding downstream 41560 7619937 ~ 7620009 (+)
trnaa-agc_7 NA coding downstream 56121 7634498 ~ 7634570 (+)
G144661 NA non-coding upstream 1340 7576060 ~ 7576788 (+)
G144568 NA non-coding upstream 2637 7575108 ~ 7575491 (+)
G144523 NA non-coding upstream 157308 7418761 ~ 7420820 (+)
G144486 NA non-coding upstream 311213 7239003 ~ 7266915 (+)
trnag-ccc_3 NA non-coding upstream 352580 7225478 ~ 7225548 (+)
G144715 NA non-coding downstream 107371 7685748 ~ 7688153 (+)
G144726 NA non-coding downstream 125704 7704081 ~ 7704763 (+)
G144782 NA non-coding downstream 437283 8015660 ~ 8018082 (+)
G144891 NA non-coding downstream 464718 8043095 ~ 8043297 (+)
G144903 NA non-coding downstream 535284 8113661 ~ 8114545 (+)
gabra6a gabra6,LOC108275227,LOC107554706,LOC107684829 other upstream 111576 7447870 ~ 7466552 (+)
trnaw-cca_12 NA other upstream 621612 6956445 ~ 6956516 (+)
trnaw-cca_11 NA other upstream 625255 6952802 ~ 6952873 (+)
trnaw-cca_10 NA other upstream 626706 6951072 ~ 6951422 (+)
LOC117598156 NA other upstream 779224 6796972 ~ 6798904 (+)
G145233 LOC107676291 other downstream 1263099 8841476 ~ 8842266 (+)
si:ch73-233f7.1 si:ch73-233f7.1,LOC108274507,LOC107660897,LOC107588310,LOC107596359,LOC107754489,LOC108430952 other downstream 2958874 10537251 ~ 10547929 (+)
LOC113529865 LOC108275059,LOC107660898,LOC106604817 other downstream 2975989 10554366 ~ 10595601 (+)
hrh2a LOC108274475 other downstream 3716751 11295128 ~ 11306318 (+)
atp6v0e1 va0e1,atp6v0e1,LOC106612155 other downstream 4017122 11595499 ~ 11597970 (+)

Expression


Co-expression Network