G144715


Basic Information

Item Value
gene id G144715
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 7685748 ~ 7688153 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU171439
tttttttttttttttttttttttttttttttCTTAtgtcttggtttaatttttattttcagtaaatgatgtatgtatgcatgtatgtttgTTACACTGAAAAAGAGTACCAAATATTAGATCTTTGAAAAAATGTATCCAGATATAGAAAATGGAAAGCTATGCTACACAGTCAAAGCGGAAGGACAGTTGAGAGATTGAGAGTGAATCTATCTGCATTCAACATTAATGCTCAGCTGTATTACTGCTTGCCATTGCCATTGATAGGCAGGCTCTTGTGGGCATCAGACTCAAGGAAAGCCTTGATTTTGGGACGGCTGGACATCCTCTGCACAAAGCCTTTCAGGGCAGGGAAGGAGTCCAGACAGGTGGGGCTCAGCACCTGGTGGTTCAACAACACGTCAAAGAGACTGTAGTCTGCAACGGAGAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU171439 True 429 lncRNA 0.39 2 7685748 7688153

Neighbor

gene id symbol gene type direction distance location
gdf9 gdf9 coding upstream 211 7680586 ~ 7685537 (+)
sowahab LOC108274591 coding upstream 7015 7674541 ~ 7678733 (+)
atp7a atp7a,LOC101485317 coding upstream 13466 7646328 ~ 7672282 (+)
trnaa-agc_7 NA coding upstream 51178 7634498 ~ 7634570 (+)
trnaa-agc_6 NA coding upstream 65739 7619937 ~ 7620009 (+)
LOC113529727 LOC108274528 coding downstream 100822 7788975 ~ 7797755 (+)
zgc:92242 LOC108275394 coding downstream 127090 7815243 ~ 7832568 (+)
ppp3cb ppp3cb,LOC108274683,LOC107660165,LOC107589094,LOC107758531,LOC107680292 coding downstream 234073 7922226 ~ 7976013 (+)
sting1 NA coding downstream 296881 7985034 ~ 7998880 (+)
si:ch211-39i2.2 ddt4l coding downstream 324429 8012582 ~ 8015287 (+)
G144665 NA non-coding upstream 107371 7578128 ~ 7578377 (+)
G144661 NA non-coding upstream 108960 7576060 ~ 7576788 (+)
G144568 NA non-coding upstream 110257 7575108 ~ 7575491 (+)
G144523 NA non-coding upstream 264928 7418761 ~ 7420820 (+)
G144486 NA non-coding upstream 418833 7239003 ~ 7266915 (+)
G144726 NA non-coding downstream 15928 7704081 ~ 7704763 (+)
G144782 NA non-coding downstream 327507 8015660 ~ 8018082 (+)
G144891 NA non-coding downstream 354942 8043095 ~ 8043297 (+)
G144903 NA non-coding downstream 425508 8113661 ~ 8114545 (+)
G144929 NA non-coding downstream 520715 8208868 ~ 8213376 (+)
gabra6a gabra6,LOC108275227,LOC107554706,LOC107684829 other upstream 219196 7447870 ~ 7466552 (+)
trnaw-cca_12 NA other upstream 729232 6956445 ~ 6956516 (+)
trnaw-cca_11 NA other upstream 732875 6952802 ~ 6952873 (+)
trnaw-cca_10 NA other upstream 734326 6951072 ~ 6951422 (+)
LOC117598156 NA other upstream 886844 6796972 ~ 6798904 (+)
G145233 LOC107676291 other downstream 1153323 8841476 ~ 8842266 (+)
si:ch73-233f7.1 si:ch73-233f7.1,LOC108274507,LOC107660897,LOC107588310,LOC107596359,LOC107754489,LOC108430952 other downstream 2849098 10537251 ~ 10547929 (+)
LOC113529865 LOC108275059,LOC107660898,LOC106604817 other downstream 2866213 10554366 ~ 10595601 (+)
hrh2a LOC108274475 other downstream 3606975 11295128 ~ 11306318 (+)
atp6v0e1 va0e1,atp6v0e1,LOC106612155 other downstream 3907346 11595499 ~ 11597970 (+)

Expression


Co-expression Network