G144726


Basic Information

Item Value
gene id G144726
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 7704081 ~ 7704763 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU171450
atgcaagattaacttgtaccagaatgatgggaagagaaaagtatggagaaggaaaggaagggctcatgatccaaagcataccacatcatctgtcaaacatgtggaggcaatgttatggcatgggcatgtttggctgccaatggaactgggtcactggggtttattgataatgtgactgttgatagaagtaacaggatgaattctgaagtgtacagagctgtactttctgctcagattcagtcaaatgctgcaaaactgataggacagcgcttcacagtacagatggataacaacccaaaacatactgtgaaagcagcccaagagcttggaaattaaatgttcttaaatggccgagtcagtcacctgacctcaacccaactgagctgcttttcacttactgaagacaaatctgaaggcagaatgacccacaaacaagcagcaactgaagatggctgcagtaaagacctggcaaatcatctcaagggaggaaactcagcatttggtgatgtccatggggtccagacttcaggtagtcattgactgcaaaggatttatctccaagtaataaaaataatcctaatatttatgattatattagtttgtcccattacttttgagcctgtgaaaatggaggaactctgtaaaaaatggctgtaattcctaaacggttaatgcaatatttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU171450 True 683 lncRNA 0.41 1 7704081 7704763

Neighbor

gene id symbol gene type direction distance location
gdf9 gdf9 coding upstream 18544 7680586 ~ 7685537 (+)
sowahab LOC108274591 coding upstream 25348 7674541 ~ 7678733 (+)
atp7a atp7a,LOC101485317 coding upstream 31799 7646328 ~ 7672282 (+)
trnaa-agc_7 NA coding upstream 69511 7634498 ~ 7634570 (+)
trnaa-agc_6 NA coding upstream 84072 7619937 ~ 7620009 (+)
LOC113529727 LOC108274528 coding downstream 84212 7788975 ~ 7797755 (+)
zgc:92242 LOC108275394 coding downstream 110480 7815243 ~ 7832568 (+)
ppp3cb ppp3cb,LOC108274683,LOC107660165,LOC107589094,LOC107758531,LOC107680292 coding downstream 217463 7922226 ~ 7976013 (+)
sting1 NA coding downstream 280271 7985034 ~ 7998880 (+)
si:ch211-39i2.2 ddt4l coding downstream 307819 8012582 ~ 8015287 (+)
G144715 NA non-coding upstream 15928 7685748 ~ 7688153 (+)
G144665 NA non-coding upstream 125704 7578128 ~ 7578377 (+)
G144661 NA non-coding upstream 127293 7576060 ~ 7576788 (+)
G144568 NA non-coding upstream 128590 7575108 ~ 7575491 (+)
G144523 NA non-coding upstream 283261 7418761 ~ 7420820 (+)
G144782 NA non-coding downstream 310897 8015660 ~ 8018082 (+)
G144891 NA non-coding downstream 338332 8043095 ~ 8043297 (+)
G144903 NA non-coding downstream 408898 8113661 ~ 8114545 (+)
G144929 NA non-coding downstream 504105 8208868 ~ 8213376 (+)
G144978 NA non-coding downstream 674205 8378968 ~ 8380517 (+)
gabra6a gabra6,LOC108275227,LOC107554706,LOC107684829 other upstream 237529 7447870 ~ 7466552 (+)
trnaw-cca_12 NA other upstream 747565 6956445 ~ 6956516 (+)
trnaw-cca_11 NA other upstream 751208 6952802 ~ 6952873 (+)
trnaw-cca_10 NA other upstream 752659 6951072 ~ 6951422 (+)
LOC117598156 NA other upstream 905177 6796972 ~ 6798904 (+)
G145233 LOC107676291 other downstream 1136713 8841476 ~ 8842266 (+)
si:ch73-233f7.1 si:ch73-233f7.1,LOC108274507,LOC107660897,LOC107588310,LOC107596359,LOC107754489,LOC108430952 other downstream 2832488 10537251 ~ 10547929 (+)
LOC113529865 LOC108275059,LOC107660898,LOC106604817 other downstream 2849603 10554366 ~ 10595601 (+)
hrh2a LOC108274475 other downstream 3590365 11295128 ~ 11306318 (+)
atp6v0e1 va0e1,atp6v0e1,LOC106612155 other downstream 3890736 11595499 ~ 11597970 (+)

Expression


Co-expression Network