G144891


Basic Information

Item Value
gene id G144891
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 8043095 ~ 8043297 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU171648
agctctgactcctgtctcttcctcagtgccactgtctctaaaccatacagcatggccggtctcaccactgtcttgtacaccttccccttgagtctcgctgatatttttctatcacacagaactcccaacacctttctccacccattccaacctgcctgcactcgcttctttacctctttcccacactctccattactctggac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU171648 True 203 lncRNA 0.50 1 8043095 8043297

Neighbor

gene id symbol gene type direction distance location
trnaa-agc_10 NA coding upstream 788 8042235 ~ 8042307 (+)
trnaa-agc_8 NA coding upstream 3424 8039599 ~ 8039671 (+)
si:ch211-39i2.2 ddt4l coding upstream 27808 8012582 ~ 8015287 (+)
sting1 NA coding upstream 44215 7985034 ~ 7998880 (+)
ppp3cb ppp3cb,LOC108274683,LOC107660165,LOC107589094,LOC107758531,LOC107680292 coding upstream 67082 7922226 ~ 7976013 (+)
trnaa-agc_11 NA coding downstream 1041 8044338 ~ 8044410 (+)
dnd1 dnd1 coding downstream 148854 8192151 ~ 8204947 (+)
trappc11 trappc11,LOC107731725,LOC107559294,LOC107758539,LOC107660171 coding downstream 177898 8221195 ~ 8241653 (+)
slc22a21 LOC108274582 coding downstream 200454 8243751 ~ 8272945 (+)
stox2b stox2b,LOC108274926,LOC108430995,LOC107758540,LOC107680916,LOC107731726 coding downstream 231114 8274411 ~ 8338474 (+)
G144782 NA non-coding upstream 25013 8015660 ~ 8018082 (+)
G144726 NA non-coding upstream 338332 7704081 ~ 7704763 (+)
G144715 NA non-coding upstream 354942 7685748 ~ 7688153 (+)
G144665 NA non-coding upstream 464718 7578128 ~ 7578377 (+)
G144661 NA non-coding upstream 466307 7576060 ~ 7576788 (+)
G144903 NA non-coding downstream 70364 8113661 ~ 8114545 (+)
G144929 NA non-coding downstream 165571 8208868 ~ 8213376 (+)
G144978 NA non-coding downstream 335671 8378968 ~ 8380517 (+)
LOC113530050 NA non-coding downstream 393070 8436367 ~ 8444838 (+)
G144991 NA non-coding downstream 403437 8446734 ~ 8446948 (+)
gabra6a gabra6,LOC108275227,LOC107554706,LOC107684829 other upstream 576543 7447870 ~ 7466552 (+)
trnaw-cca_12 NA other upstream 1086579 6956445 ~ 6956516 (+)
trnaw-cca_11 NA other upstream 1090222 6952802 ~ 6952873 (+)
trnaw-cca_10 NA other upstream 1091673 6951072 ~ 6951422 (+)
LOC117598156 NA other upstream 1244191 6796972 ~ 6798904 (+)
G145233 LOC107676291 other downstream 798179 8841476 ~ 8842266 (+)
si:ch73-233f7.1 si:ch73-233f7.1,LOC108274507,LOC107660897,LOC107588310,LOC107596359,LOC107754489,LOC108430952 other downstream 2493954 10537251 ~ 10547929 (+)
LOC113529865 LOC108275059,LOC107660898,LOC106604817 other downstream 2511069 10554366 ~ 10595601 (+)
hrh2a LOC108274475 other downstream 3251831 11295128 ~ 11306318 (+)
atp6v0e1 va0e1,atp6v0e1,LOC106612155 other downstream 3552202 11595499 ~ 11597970 (+)

Expression


Co-expression Network