G144903


Basic Information

Item Value
gene id G144903
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 8113661 ~ 8114545 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU171660
tctatcacaAAGCGCCAAAGCACACTAacgcacacacatttgtacACTTATTCTCAACTAGGGGTGATTTGGAGTAGCCGATCTgtctatctgcatgtttttttttaagaagggaggaaactagagagcccagagaaaacccacatagACAAGgggaactccacacagacagtaacctgacgCTGAAGCCCTGAAGTAGGATCATTTGGTGAGGAAAAACGTTAAGctttttaataaagttgagaTATTTCATTAGCTAACTTCAACTTTGCATTGGATATGTTTACATGCGCAttaatattctgatattaatcggaatttggcaatattctaattagtactgAGTCATGGAAACGCCTCAATCTGattgcctgattcagattaaaacaataatctgattccccaaattccgattcccactcctggaatatgcctgtttttaatcggaaatttgttgcatgtaaacaccttattcagaaaatccactgaaaggagatacatacacatgctcagtctgcaaggaattgtgggtgctaacagatgcttagctgcaGGCTAgctatttaggaatggcaactcaggcatacttacaacaaatATGTATACAGGAATTTTcagatgcctgtacgcatataaatatcgtattcggaatatggctgcaacctgaatatagaccttaaacagaatttgatgCGTACAGAATAATTTCTGTAAATACTGAAAGCTTAACCCGTGAGTTTCAGAAATAAGTTGAATAAAGTCACAAGCTGCAATGGCTAAAACTGGAGAACAGGATTTGCCTGTGGATTTTCTAACGATCGGAAAAAAAGGAGATAATTAGGAATGACTGTTTCATTTGTAGGATGCAACGTTCactatgtttgt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU171660 True 885 lncRNA 0.38 1 8113661 8114545

Neighbor

gene id symbol gene type direction distance location
trnaa-agc_11 NA coding upstream 69251 8044338 ~ 8044410 (+)
trnaa-agc_10 NA coding upstream 71354 8042235 ~ 8042307 (+)
trnaa-agc_8 NA coding upstream 73990 8039599 ~ 8039671 (+)
si:ch211-39i2.2 ddt4l coding upstream 98374 8012582 ~ 8015287 (+)
sting1 NA coding upstream 114781 7985034 ~ 7998880 (+)
dnd1 dnd1 coding downstream 77606 8192151 ~ 8204947 (+)
trappc11 trappc11,LOC107731725,LOC107559294,LOC107758539,LOC107660171 coding downstream 106650 8221195 ~ 8241653 (+)
slc22a21 LOC108274582 coding downstream 129206 8243751 ~ 8272945 (+)
stox2b stox2b,LOC108274926,LOC108430995,LOC107758540,LOC107680916,LOC107731726 coding downstream 159866 8274411 ~ 8338474 (+)
acsl1b LOC108274927,LOC108430994,LOC107758469,LOC107552354 coding downstream 227512 8342057 ~ 8363104 (+)
G144891 NA non-coding upstream 70364 8043095 ~ 8043297 (+)
G144782 NA non-coding upstream 95579 8015660 ~ 8018082 (+)
G144726 NA non-coding upstream 408898 7704081 ~ 7704763 (+)
G144715 NA non-coding upstream 425508 7685748 ~ 7688153 (+)
G144665 NA non-coding upstream 535284 7578128 ~ 7578377 (+)
G144929 NA non-coding downstream 94323 8208868 ~ 8213376 (+)
G144978 NA non-coding downstream 264423 8378968 ~ 8380517 (+)
LOC113530050 NA non-coding downstream 321822 8436367 ~ 8444838 (+)
G144991 NA non-coding downstream 332189 8446734 ~ 8446948 (+)
G145113 NA non-coding downstream 440760 8555305 ~ 8555536 (+)
gabra6a gabra6,LOC108275227,LOC107554706,LOC107684829 other upstream 647109 7447870 ~ 7466552 (+)
trnaw-cca_12 NA other upstream 1157145 6956445 ~ 6956516 (+)
trnaw-cca_11 NA other upstream 1160788 6952802 ~ 6952873 (+)
trnaw-cca_10 NA other upstream 1162239 6951072 ~ 6951422 (+)
LOC117598156 NA other upstream 1314757 6796972 ~ 6798904 (+)
G145233 LOC107676291 other downstream 726931 8841476 ~ 8842266 (+)
si:ch73-233f7.1 si:ch73-233f7.1,LOC108274507,LOC107660897,LOC107588310,LOC107596359,LOC107754489,LOC108430952 other downstream 2422706 10537251 ~ 10547929 (+)
LOC113529865 LOC108275059,LOC107660898,LOC106604817 other downstream 2439821 10554366 ~ 10595601 (+)
hrh2a LOC108274475 other downstream 3180583 11295128 ~ 11306318 (+)
atp6v0e1 va0e1,atp6v0e1,LOC106612155 other downstream 3480954 11595499 ~ 11597970 (+)

Expression


Co-expression Network