G144978


Basic Information

Item Value
gene id G144978
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 8378968 ~ 8380517 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU171751
ATGATGGCAGGTGCATCTGCTGTGTTCTCCACTGTGAATCTGTCCActcttctctgcctctcttGGAACATCCTGGAACCTCTGTTGGATGTCAGATTCAGCTCCTCGATCATTACATCCTTTGGTATGCTGGCCTTCTTCCCTAGATTCAGGCCCTCTGAAATGCATACAAAGCACACACTAACAAATATTCTCTCTATGACTGTTGGACTCGTTCATTTCTTGCTGGACTATAGTGTGAAACCTTTGCTCCTCCCAGCtaatttgaacattttgaaGGCTTGTGTGCCAAAACAGCAGTTTCCCCTGACTTGAGCCTGATCTTGATTAACACTAAAACCACATAAATGGCCCTATTTGAGTGGCACAAAACTCTTTATTATTACTCTGTAGCACAGACCCTGGAATATAAATAGACTGATGGATGAAGAAACTGCCAGGGGGAAAATTGCTTAACAGTGacgtttttaatttttcagattCTCAAGAACTGTGTGGATATATTTCCCACTTTGGAGTCAGATTTAGCTGAGCTCAAGGGGTTGTACAGTGCCAAAAATGGCACAAAGCTGAGGTCACTGGAAAATAACGCAAAACAAACAGGCAAATGTGTGGAGTGTTTCCTTGGCAGTGCTGGCTGCACGGCGGATCCGTCTCCGTTTACAGGGTGTCATGGCACTGGAAGTTGTCTGCTCACGTGACTTTAAAGCATGAGTTTGATCTTGTCTGCCACTGTCAATCAAAGAGAACACTACAAGTAGTGCAAAAGTTTAAGTCGTTGTCACAGAGGAAAACAAAAGTGCTATTTTGGTCACTATCCATTGCTGGCTGGCTCTTTGTTTTCTAGGGGTCTATGTGTCTCACCTCCTCGAGCTTCTCTACTCAGTGCCCGTGCCTGTTGCTGCCACtgtttgttcatgttgttgTTTGCAGTCTGCATCCTCTCCCCTCTgtgtagggtttaggggaaGGCTGGGCACTGAGACGTTGCTCGAGGTCTGTCTGGATCCTGTGTTCAAGAGGGTTTGTATAGACTCAGACAGGCCAATTTCTGTGCTTAC

Function

GO:

id name namespace
GO:0009259 ribonucleotide metabolic process biological_process
GO:0009260 ribonucleotide biosynthetic process biological_process
GO:0006091 generation of precursor metabolites and energy biological_process
GO:1901293 nucleoside phosphate biosynthetic process biological_process
GO:0006163 purine nucleotide metabolic process biological_process
GO:0006164 purine nucleotide biosynthetic process biological_process
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009124 nucleoside monophosphate biosynthetic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0046390 ribose phosphate biosynthetic process biological_process
GO:0009150 purine ribonucleotide metabolic process biological_process
GO:0009152 purine ribonucleotide biosynthetic process biological_process
GO:0090407 organophosphate biosynthetic process biological_process
GO:0009156 ribonucleoside monophosphate biosynthetic process biological_process
GO:0072521 purine-containing compound metabolic process biological_process
GO:0072522 purine-containing compound biosynthetic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0009165 nucleotide biosynthetic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:0019693 ribose phosphate metabolic process biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0043292 contractile fiber cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0036379 myofilament cellular_component
GO:0005861 troponin complex cellular_component
GO:0005865 striated muscle thin filament cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component
GO:0005488 binding molecular_function
GO:0005509 calcium ion binding molecular_function
GO:0005516 calmodulin binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU171751 True 1061 lncRNA 0.45 2 8378968 8380517

Neighbor

gene id symbol gene type direction distance location
acsl1b LOC108274927,LOC108430994,LOC107758469,LOC107552354 coding upstream 15864 8342057 ~ 8363104 (+)
stox2b stox2b,LOC108274926,LOC108430995,LOC107758540,LOC107680916,LOC107731726 coding upstream 40494 8274411 ~ 8338474 (+)
slc22a21 LOC108274582 coding upstream 106023 8243751 ~ 8272945 (+)
trappc11 trappc11,LOC107731725,LOC107559294,LOC107758539,LOC107660171 coding upstream 137315 8221195 ~ 8241653 (+)
dnd1 dnd1 coding upstream 174021 8192151 ~ 8204947 (+)
LOC113530022 LOC108274535,LOC108430945,LOC103027224,LOC107715168,LOC107678618,LOC101073614 coding downstream 1754 8382271 ~ 8399322 (+)
rgs14a LOC108275341 coding downstream 31518 8412035 ~ 8433940 (+)
slc34a1a slc34a1,LOC108430989 coding downstream 69864 8450381 ~ 8475004 (+)
LOC113529936 bnip1,bnip1a,LOC108430943,LOC107598374,LOC107756689 coding downstream 215553 8596070 ~ 8600432 (+)
cpeb4a cpeb4,LOC108275338,LOC108430986 coding downstream 315535 8696052 ~ 8721692 (+)
G144929 NA non-coding upstream 165592 8208868 ~ 8213376 (+)
G144903 NA non-coding upstream 264423 8113661 ~ 8114545 (+)
G144891 NA non-coding upstream 335671 8043095 ~ 8043297 (+)
G144782 NA non-coding upstream 360886 8015660 ~ 8018082 (+)
G144726 NA non-coding upstream 674205 7704081 ~ 7704763 (+)
LOC113530050 NA non-coding downstream 55850 8436367 ~ 8444838 (+)
G144991 NA non-coding downstream 66217 8446734 ~ 8446948 (+)
G145113 NA non-coding downstream 174788 8555305 ~ 8555536 (+)
G145232 NA non-coding downstream 460549 8841066 ~ 8841359 (+)
G145235 NA non-coding downstream 461829 8842346 ~ 8842681 (+)
gabra6a gabra6,LOC108275227,LOC107554706,LOC107684829 other upstream 912416 7447870 ~ 7466552 (+)
trnaw-cca_12 NA other upstream 1422452 6956445 ~ 6956516 (+)
trnaw-cca_11 NA other upstream 1426095 6952802 ~ 6952873 (+)
trnaw-cca_10 NA other upstream 1427546 6951072 ~ 6951422 (+)
LOC117598156 NA other upstream 1580064 6796972 ~ 6798904 (+)
G145233 LOC107676291 other downstream 460959 8841476 ~ 8842266 (+)
si:ch73-233f7.1 si:ch73-233f7.1,LOC108274507,LOC107660897,LOC107588310,LOC107596359,LOC107754489,LOC108430952 other downstream 2156734 10537251 ~ 10547929 (+)
LOC113529865 LOC108275059,LOC107660898,LOC106604817 other downstream 2173849 10554366 ~ 10595601 (+)
hrh2a LOC108274475 other downstream 2914611 11295128 ~ 11306318 (+)
atp6v0e1 va0e1,atp6v0e1,LOC106612155 other downstream 3214982 11595499 ~ 11597970 (+)

Expression


Co-expression Network