G146168


Basic Information

Item Value
gene id G146168
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 10526543 ~ 10526858 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU173117
CTAGCATCACTTCCAACCTGTAATCCCGGCAATTCCACTCGGCTGACTCAGCGGGAAAGTGGAGGATTCGGAGAAGGAGGGTGAGAGAGGGAagaagggaaagagaaaagggGGAAGAGAGATAGAAAACGGCCTCTGGAAGCAGCACGGTGGAAAGATTCCACAGCCAAACCCAGAGGAAGGTGTATGGTAAGGCTGCAGCAGGAAGGAATGTGAAAAATTTGCGTGAGAACTGAGTAGTGACCCGAGACCTGCAGgaattatgggaaaaaaaacatatcccAAAGACCCACAGGAAACACACGCCCTACATCAC

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU173117 True 316 lncRNA 0.50 1 10526543 10526858

Neighbor

gene id symbol gene type direction distance location
fgf18a fgf18a,LOC108274431,LOC103029481,LOC108430953,LOC105893086,LOC107747128,LOC107660900 coding upstream 633 10508813 ~ 10525910 (+)
fbxw11a fbxw11a,fbxw11,LOC108275024,LOC108430955,LOC105893085,LOC107655672,LOC107588312,LOC107660901,LOC107754486,LOC107747095 coding upstream 55264 10452347 ~ 10471279 (+)
etf1a etf1,LOC108275025,LOC108430956 coding upstream 78331 10434947 ~ 10448212 (+)
bicc2 LOC108274692 coding upstream 507610 9997288 ~ 10018933 (+)
ndst1a ndst1,LOC108274691,LOC108430959,LOC102795901 coding upstream 540128 9918102 ~ 9986415 (+)
pcdhb LOC108275060,LOC108430951,LOC107754491,LOC107747094,LOC107596358 coding downstream 28442 10555300 ~ 10557826 (+)
LOC117598004 LOC107596395,LOC108274580 coding downstream 31472 10558330 ~ 10560166 (+)
LOC117598040 LOC107596395,LOC107660898,LOC108275059,LOC106596699 coding downstream 35205 10562063 ~ 10567099 (+)
LOC117598002 LOC108275059,LOC107660898 coding downstream 40695 10567553 ~ 10573096 (+)
LOC117598003 LOC108275059,LOC107754490,LOC107660898 coding downstream 46761 10573619 ~ 10576056 (+)
G146141 NA non-coding upstream 75520 10450676 ~ 10451023 (+)
G145966 NA non-coding upstream 315048 10208004 ~ 10211495 (+)
LOC113530164 NA non-coding upstream 336350 10170715 ~ 10190193 (+)
G145950 NA non-coding upstream 422355 10103985 ~ 10104188 (+)
G145842 NA non-coding upstream 612712 9907797 ~ 9913831 (+)
LOC113529600 NA non-coding downstream 229051 10755909 ~ 10758807 (+)
G146322 diaph1,LOC107754500,LOC107660904,LOC107588363,LOC107747105 non-coding downstream 368883 10895741 ~ 10896384 (+)
G146308 NA non-coding downstream 489237 11016095 ~ 11017354 (+)
G146377 NA non-coding downstream 524358 11051216 ~ 11051420 (+)
G146380 NA non-coding downstream 526309 11053167 ~ 11053425 (+)
G145233 LOC107676291 other upstream 1684277 8841476 ~ 8842266 (+)
gabra6a gabra6,LOC108275227,LOC107554706,LOC107684829 other upstream 3059991 7447870 ~ 7466552 (+)
trnaw-cca_12 NA other upstream 3570027 6956445 ~ 6956516 (+)
trnaw-cca_11 NA other upstream 3573670 6952802 ~ 6952873 (+)
trnaw-cca_10 NA other upstream 3575121 6951072 ~ 6951422 (+)
si:ch73-233f7.1 si:ch73-233f7.1,LOC108274507,LOC107660897,LOC107588310,LOC107596359,LOC107754489,LOC108430952 other downstream 10393 10537251 ~ 10547929 (+)
LOC113529865 LOC108275059,LOC107660898,LOC106604817 other downstream 27508 10554366 ~ 10595601 (+)
hrh2a LOC108274475 other downstream 768270 11295128 ~ 11306318 (+)
atp6v0e1 va0e1,atp6v0e1,LOC106612155 other downstream 1068641 11595499 ~ 11597970 (+)
G147542 NA other downstream 2390061 12916919 ~ 12917254 (+)

Expression


Co-expression Network