G146377


Basic Information

Item Value
gene id G146377
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 11051216 ~ 11051420 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU173380
ATTAAATAAGAGTGCATTTGTGTATTGGTGATGTGTGAGAAATATTTTGTTTGATGTGTGAGAAATATTAAGTTGCTAGAGGACAAAAACTTGTATgcaataattaatattacttAATGTTAGGTTAGGACAAAAATATGGTTAggtttgacaaaaaaaacaagtgaattagttttattgtgcatttcatttttttagttttttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU173380 True 205 lncRNA 0.25 1 11051216 11051420

Neighbor

gene id symbol gene type direction distance location
LOC117597888 NA coding upstream 216692 10832104 ~ 10834524 (+)
LOC117597887 LOC108274931,LOC108274937,LOC108274933,LOC108438829,LOC108438834,LOC108274936 coding upstream 223830 10825470 ~ 10827386 (+)
LOC117597912 LOC108274933,LOC108274937,LOC108274931 coding upstream 238094 10811938 ~ 10813122 (+)
LOC117597886 LOC108274931,LOC108274933,LOC108438829,LOC108438834,LOC108274936,LOC108274937 coding upstream 240021 10804439 ~ 10811195 (+)
LOC117597913 LOC108274937,LOC108274933,LOC108274931,LOC108438833 coding upstream 246777 10803659 ~ 10804439 (+)
LOC113529553 fam196b coding downstream 147446 11198866 ~ 11227888 (+)
LOC113529554 tlx3 coding downstream 272937 11324357 ~ 11335757 (+)
pmt LOC108275150,LOC108438819,LOC107552346,LOC107662165,LOC107731361 coding downstream 342758 11394178 ~ 11413501 (+)
zgc:152774 zgc:152774,LOC108274965,LOC107731348 coding downstream 368897 11420317 ~ 11441411 (+)
cetn4 cetn1,LOC108438842,LOC103037928,LOC107596341 coding downstream 423001 11474421 ~ 11481777 (+)
G146308 NA non-coding upstream 33862 11016095 ~ 11017354 (+)
G146322 diaph1,LOC107754500,LOC107660904,LOC107588363,LOC107747105 non-coding upstream 154832 10895741 ~ 10896384 (+)
LOC113529600 NA non-coding upstream 292409 10755909 ~ 10758807 (+)
G146168 NA non-coding upstream 524358 10526543 ~ 10526858 (+)
G146141 NA non-coding upstream 600193 10450676 ~ 10451023 (+)
G146380 NA non-coding downstream 1747 11053167 ~ 11053425 (+)
G146513 NA non-coding downstream 170161 11221581 ~ 11293483 (+)
G146576 NA non-coding downstream 365758 11417178 ~ 11417389 (+)
G146573 NA non-coding downstream 390110 11441530 ~ 11443247 (+)
G146645 il17b non-coding downstream 466902 11518322 ~ 11579432 (+)
LOC113529865 LOC108275059,LOC107660898,LOC106604817 other upstream 455615 10554366 ~ 10595601 (+)
si:ch73-233f7.1 si:ch73-233f7.1,LOC108274507,LOC107660897,LOC107588310,LOC107596359,LOC107754489,LOC108430952 other upstream 503287 10537251 ~ 10547929 (+)
G145233 LOC107676291 other upstream 2208950 8841476 ~ 8842266 (+)
gabra6a gabra6,LOC108275227,LOC107554706,LOC107684829 other upstream 3584664 7447870 ~ 7466552 (+)
trnaw-cca_12 NA other upstream 4094700 6956445 ~ 6956516 (+)
hrh2a LOC108274475 other downstream 243708 11295128 ~ 11306318 (+)
atp6v0e1 va0e1,atp6v0e1,LOC106612155 other downstream 544079 11595499 ~ 11597970 (+)
G147542 NA other downstream 1865499 12916919 ~ 12917254 (+)
zgc:172145 LOC108275003 other downstream 2297903 13349323 ~ 13353262 (+)
prr33 prr33,LOC108428828,LOC107595228,LOC107742059,LOC107675453 other downstream 2321452 13372872 ~ 13389196 (+)

Expression


Co-expression Network